2vim - Revision history

OCA at 05:31, 17 October 2024

2024-10-17T05:31:55Z

← Older revision		Revision as of 05:31, 17 October 2024
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vim_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vim_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 15:21, 13 December 2023

2023-12-13T15:21:25Z

← Older revision		Revision as of 15:21, 13 December 2023
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	<StructureSection load='2vim' size='340' side='right'caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='2vim' size='340' side='right'caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Fashe Fashe~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VIM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Fasciola_hepatica Fasciola hepatica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VIM FirstGlance]. <br>
	</td></tr><tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"~~><span class~~=~~'plainlinks'~~>~~[https://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl~~-~~sulfate reductase (thioredoxin)]~~, ~~with EC number~~ [~~https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8~~ 1.~~8.4.8] </span>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.38Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [https://pdbe.org/2vim PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [https://www.ebi.ac.uk/pdbsum/2vim PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vim ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [https://pdbe.org/2vim PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [https://www.ebi.ac.uk/pdbsum/2vim PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vim ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q9U1G7_FASHE Q9U1G7_FASHE]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Fashe~~]]		[[Category: Fasciola hepatica]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Garcia-Rodriguez, E]]		[[Category: Garcia-Rodriguez E]]
	[[Category: Isupov~~, M N~~]]		[[Category: Isupov MN]]
	[[Category: Line, K]]		[[Category: Line K]]
	[[Category: Littlechild~~, J A~~]]		[[Category: Littlechild JA]]
	[[Category: Maggioli, G]]		[[Category: Maggioli G]]
	[[Category: Parra, F]]		[[Category: Parra F]]
	~~[[Category: Oxidoreductase]]~~
	~~[[Category: Thioredoxin]]~~
	~~[[Category: Thioredoxin fold]]~~
	~~[[Category: Trx~~]]

OCA at 21:00, 20 October 2021

2021-10-20T21:00:48Z

← Older revision		Revision as of 21:00, 20 October 2021
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	<StructureSection load='2vim' size='340' side='right'caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='2vim' size='340' side='right'caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Fashe Fashe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VIM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Fashe Fashe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VIM FirstGlance]. <br>
	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl-sulfate reductase (thioredoxin)], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8 1.8.4.8] </span></td></tr>		</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl-sulfate reductase (thioredoxin)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8 1.8.4.8] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [~~http~~://pdbe.org/2vim PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vim PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vim ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [https://pdbe.org/2vim PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [https://www.ebi.ac.uk/pdbsum/2vim PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vim ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	==See Also==		==See Also==
	*[[Art:Thioredoxin: A small protein with a radical role\|Art:Thioredoxin: A small protein with a radical role]]		*[[Art:Thioredoxin: A small protein with a radical role\|Art:Thioredoxin: A small protein with a radical role]]
	*[[Thioredoxin\|Thioredoxin]]		*[[Thioredoxin 3D structures\|Thioredoxin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:37, 18 December 2019

2019-12-18T13:37:55Z

← Older revision		Revision as of 13:37, 18 December 2019
Line 1:		Line 1:

	==X-ray structure of Fasciola hepatica thioredoxin==		==X-ray structure of Fasciola hepatica thioredoxin==
	<StructureSection load='2vim' size='340' side='right' caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='2vim' size='340' side='right'caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fashe Fashe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fashe Fashe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIM FirstGlance]. <br>
Line 29:		Line 29:
	==See Also==		==See Also==
	*[[Art:Thioredoxin: A small protein with a radical role\|Art:Thioredoxin: A small protein with a radical role]]		*[[Art:Thioredoxin: A small protein with a radical role\|Art:Thioredoxin: A small protein with a radical role]]
			*[[Thioredoxin\|Thioredoxin]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Fashe]]		[[Category: Fashe]]
			[[Category: Large Structures]]
	[[Category: Garcia-Rodriguez, E]]		[[Category: Garcia-Rodriguez, E]]
	[[Category: Isupov, M N]]		[[Category: Isupov, M N]]

OCA at 07:40, 28 February 2018

2018-02-28T07:40:04Z

← Older revision		Revision as of 07:40, 28 February 2018
Line 1:		Line 1:
	==X-~~RAY STRUCTURE OF FASCIOLA HEPATICA THIOREDOXIN~~==
			==X-ray structure of Fasciola hepatica thioredoxin==
	<StructureSection load='2vim' size='340' side='right' caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='2vim' size='340' side='right' caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fashe Fashe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fashe Fashe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIM FirstGlance]. <br>
	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl-sulfate reductase (thioredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8 1.8.4.8] </span></td></tr>		</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl-sulfate reductase (thioredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8 1.8.4.8] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [http://pdbe.org/2vim PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [http://www.ebi.ac.uk/pdbsum/2vim PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [http://pdbe.org/2vim PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [http://www.ebi.ac.uk/pdbsum/2vim PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vim ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vim_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vim_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 28:

	==See Also==		==See Also==
	*[[Thioredoxin\|Thioredoxin]]		*[[Art:Thioredoxin: A small protein with a radical role\|Art:Thioredoxin: A small protein with a radical role]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 03:58, 7 February 2016

2016-02-07T03:58:15Z

← Older revision		Revision as of 03:58, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='2vim' size='340' side='right' caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='2vim' size='340' side='right' caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Fasciola_hepatica Fasciola hepatica~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fashe Fashe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIM FirstGlance]. <br>
	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl-sulfate reductase (thioredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8 1.8.4.8] </span></td></tr>		</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl-sulfate reductase (thioredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8 1.8.4.8] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [http://www.ebi.ac.uk/pdbsum/2vim PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [http://pdbe.org/2vim PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [http://www.ebi.ac.uk/pdbsum/2vim PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vim ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2vim" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 31:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Fasciola hepatica~~]]		[[Category: Fashe]]
	[[Category: Garcia-Rodriguez, E]]		[[Category: Garcia-Rodriguez, E]]
	[[Category: Isupov, M N]]		[[Category: Isupov, M N]]

OCA at 14:46, 19 January 2015

2015-01-19T14:46:17Z

← Older revision		Revision as of 14:46, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fasciola_hepatica Fasciola hepatica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fasciola_hepatica Fasciola hepatica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIM FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl-sulfate reductase (thioredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8 1.8.4.8] </span></td></tr>		</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl-sulfate reductase (thioredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8 1.8.4.8] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [http://www.ebi.ac.uk/pdbsum/2vim PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [http://www.ebi.ac.uk/pdbsum/2vim PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Fasciola hepatica]]		[[Category: Fasciola hepatica]]
	[[Category: Garcia-Rodriguez, E.]]		[[Category: Garcia-Rodriguez, E]]
	[[Category: Isupov, M N.]]		[[Category: Isupov, M N]]
	[[Category: Line, K.]]		[[Category: Line, K]]
	[[Category: Littlechild, J A.]]		[[Category: Littlechild, J A]]
	[[Category: Maggioli, G.]]		[[Category: Maggioli, G]]
	[[Category: Parra, F.]]		[[Category: Parra, F]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Thioredoxin]]		[[Category: Thioredoxin]]
	[[Category: Thioredoxin fold]]		[[Category: Thioredoxin fold]]
	[[Category: Trx]]		[[Category: Trx]]

OCA at 07:17, 29 September 2014

2014-09-29T07:17:36Z

← Older revision		Revision as of 07:17, 29 September 2014
Line 1:		Line 1:
	[[Image:~~2vim~~.~~png~~\|~~left~~\|~~200px~~]]		==X-RAY STRUCTURE OF FASCIOLA HEPATICA THIOREDOXIN==
			<StructureSection load='2vim' size='340' side='right' caption='[[2vim]], [[Resolution\|resolution]] 1.38Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fasciola_hepatica Fasciola hepatica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIM FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoadenylyl-sulfate_reductase_(thioredoxin) Phosphoadenylyl-sulfate reductase (thioredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.4.8 1.8.4.8] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vim FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vim OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vim RCSB], [http://www.ebi.ac.uk/pdbsum/2vim PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vim_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The Fasciola hepatica thioredoxin protein structure has been determined to 1.45A resolution. This is the first example of a single crystal structure to show the active site cysteine residues in both the reduced and disulfide oxidised form. Consistent with this observation the process of oxidation appears to require very little rearrangement of the surrounding protein structure. The F. hepatica thioredoxin structure has been compared to other thioredoxin protein structures already known and is found to be highly conserved. The F. hepatica protein is most similar to that of the thioredoxin from its human and animal hosts but it resembles other parasitic thioredoxins with regard to having no additional cysteine residues and is therefore not regulated by transient disulfide bond formation as proposed for thioredoxins from higher eukaryotic species.

	~~{{STRUCTURE_2vim\| PDB=2vim \| SCENE= }}~~		The Fasciola hepatica thioredoxin: High resolution structure reveals two oxidation states.,Line K, Isupov MN, Garcia-Rodriguez E, Maggioli G, Parra F, Littlechild JA Mol Biochem Parasitol. 2008 Sep;161(1):44-8. Epub 2008 Jun 21. PMID:18620002<ref>PMID:18620002</ref>

	~~===X-RAY STRUCTURE OF FASCIOLA HEPATICA THIOREDOXIN===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_18620002}}~~

	~~==About this Structure==~~
	~~[[2vim]] is~~ a ~~1 chain structure with sequence from [http://en.wikipedia~~.~~org/wiki/Fasciola_hepatica Fasciola hepatica]~~. ~~Full crystallographic information is available from [http://oca~~.~~weizmann.ac.il/oca-bin~~/~~ocashort?id=2VIM OCA].~~

	==See Also==		==See Also==
	*[[Thioredoxin\|Thioredoxin]]		*[[Thioredoxin\|Thioredoxin]]
			== References ==
	==~~Reference~~==		<references/>
	<~~ref group="xtra">PMID:018620002<~~/~~ref~~><~~ref group="xtra">PMID:011403382</ref><references group="xtra"~~/>		__TOC__
			</StructureSection>
	[[Category: Fasciola hepatica]]		[[Category: Fasciola hepatica]]
	[[Category: Garcia-Rodriguez, E.]]		[[Category: Garcia-Rodriguez, E.]]

OCA at 05:31, 20 October 2012

2012-10-20T05:31:57Z

← Older revision		Revision as of 05:31, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
	[[2vim]] is a 1 chain structure ~~of [[Thioredoxin]]~~ with sequence from [http://en.wikipedia.org/wiki/Fasciola_hepatica Fasciola hepatica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA].		[[2vim]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fasciola_hepatica Fasciola hepatica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIM OCA].

	==See Also==		==See Also==

OCA at 10:21, 25 July 2012

2012-07-25T10:21:00Z

← Older revision		Revision as of 10:21, 25 July 2012
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	[[Image:2vim.png\|left\|200px]]		[[Image:2vim.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2vim", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2vim\| PDB=2vim \| SCENE= }}		{{STRUCTURE_2vim\| PDB=2vim \| SCENE= }}

	===X-RAY STRUCTURE OF FASCIOLA HEPATICA THIOREDOXIN===		===X-RAY STRUCTURE OF FASCIOLA HEPATICA THIOREDOXIN===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_18620002}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 18620002 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_18620002}}		{{ABSTRACT_PUBMED_18620002}}

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	==See Also==		==See Also==
	*[[Thioredoxin]]		*[[Thioredoxin\|Thioredoxin]]

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~18620002~~</ref><ref group="xtra">PMID:~~11403382~~</ref><references group="xtra"/>		<ref group="xtra">PMID:018620002</ref><ref group="xtra">PMID:011403382</ref><references group="xtra"/>
	[[Category: Fasciola hepatica]]		[[Category: Fasciola hepatica]]
	[[Category: Garcia-Rodriguez, E.]]		[[Category: Garcia-Rodriguez, E.]]