2vm0 - Revision history

OCA at 17:31, 8 September 2026

2026-09-08T17:31:20Z

← Older revision		Revision as of 17:31, 8 September 2026
Line 15:		Line 15:
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm0_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 15:24, 13 December 2023

2023-12-13T15:24:43Z

← Older revision		Revision as of 15:24, 13 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VM0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VM0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</div></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [https://pdbe.org/2vm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [https://www.ebi.ac.uk/pdbsum/2vm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [https://pdbe.org/2vm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [https://www.ebi.ac.uk/pdbsum/2vm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.		[https://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 38:		Line 38:
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Andersson~~, K K~~]]		[[Category: Andersson KK]]
	[[Category: Gorbitz~~, C H~~]]		[[Category: Gorbitz CH]]
	[[Category: Hersleth, H P]]		[[Category: Hersleth H-P]]
	~~[[Category: Ferryl]]~~
	~~[[Category: Haem]]~~
	~~[[Category: Heme]]~~
	~~[[Category: Iron]]~~
	~~[[Category: Metal-binding]]~~
	~~[[Category: Monooxygenase]]~~
	~~[[Category: Muscle protein]]~~
	~~[[Category: Oxygen activation]]~~
	~~[[Category: Oxygen transport]]~~
	~~[[Category: Peroxidase]]~~
	~~[[Category: Radiolytic- reduction]]~~
	~~[[Category: Reaction intermediate]]~~
	~~[[Category: Transport]]~~
	~~[[Category: X-ray-induced-photoreduction~~]]

OCA at 11:39, 30 March 2022

2022-03-30T11:39:56Z

← Older revision		Revision as of 11:39, 30 March 2022
Line 3:		Line 3:
	<StructureSection load='2vm0' size='340' side='right'caption='[[2vm0]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2vm0' size='340' side='right'caption='[[2vm0]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm0]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VM0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VM0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [~~http~~://pdbe.org/2vm0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vm0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [https://pdbe.org/2vm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [https://www.ebi.ac.uk/pdbsum/2vm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.		[[https://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:07, 25 June 2020

2020-06-25T08:07:15Z

← Older revision		Revision as of 08:07, 25 June 2020
Line 1:		Line 1:

	==Crystal structure of radiation-induced myoglobin compound II generated after annealing of peroxymyoglobin==		==Crystal structure of radiation-induced myoglobin compound II generated after annealing of peroxymyoglobin==
	<StructureSection load='2vm0' size='340' side='right' caption='[[2vm0]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2vm0' size='340' side='right'caption='[[2vm0]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VM0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VM0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [http://pdbe.org/2vm0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [http://pdbe.org/2vm0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 31:		Line 31:

	==See Also==		==See Also==
	*[[Myoglobin\|Myoglobin]]		*[[Myoglobin 3D structures\|Myoglobin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
			[[Category: Large Structures]]
	[[Category: Andersson, K K]]		[[Category: Andersson, K K]]
	[[Category: Gorbitz, C H]]		[[Category: Gorbitz, C H]]

OCA at 21:18, 19 September 2018

2018-09-19T21:18:10Z

← Older revision		Revision as of 21:18, 19 September 2018
Line 1:		Line 1:

	==~~CRYSTAL STRUCTURE OF RADIATION~~-~~INDUCED MYOGLOBIN COMPOUND~~ II ~~GENERATED AFTER ANNEALING OF PEROXYMYOGLOBIN~~==		==Crystal structure of radiation-induced myoglobin compound II generated after annealing of peroxymyoglobin==
	<StructureSection load='2vm0' size='340' side='right' caption='[[2vm0]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2vm0' size='340' side='right' caption='[[2vm0]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm0_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 20:43, 5 August 2016

2016-08-05T20:43:45Z

← Older revision		Revision as of 20:43, 5 August 2016
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF RADIATION-INDUCED MYOGLOBIN COMPOUND II GENERATED AFTER ANNEALING OF PEROXYMYOGLOBIN==		==CRYSTAL STRUCTURE OF RADIATION-INDUCED MYOGLOBIN COMPOUND II GENERATED AFTER ANNEALING OF PEROXYMYOGLOBIN==
	<StructureSection load='2vm0' size='340' side='right' caption='[[2vm0]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2vm0' size='340' side='right' caption='[[2vm0]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm0 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [http://pdbe.org/2vm0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vm0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2vm0" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 21:45, 25 December 2014

2014-12-25T21:45:36Z

← Older revision		Revision as of 21:45, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM0 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm0 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm0 PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
	[[Category: Andersson, K K.]]		[[Category: Andersson, K K]]
	[[Category: Gorbitz, C H.]]		[[Category: Gorbitz, C H]]
	[[Category: Hersleth, H P.]]		[[Category: Hersleth, H P]]
	[[Category: Ferryl]]		[[Category: Ferryl]]
	[[Category: Haem]]		[[Category: Haem]]

OCA at 08:01, 29 September 2014

2014-09-29T08:01:46Z

← Older revision		Revision as of 08:01, 29 September 2014
Line 1:		Line 1:
	[[Image:~~2vm0~~.~~png~~\|~~left~~\|~~200px~~]]		==CRYSTAL STRUCTURE OF RADIATION-INDUCED MYOGLOBIN COMPOUND II GENERATED AFTER ANNEALING OF PEROXYMYOGLOBIN==
			<StructureSection load='2vm0' size='340' side='right' caption='[[2vm0]], [[Resolution\|resolution]] 1.60Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2vm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM0 FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1dwr\|1dwr]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1rse\|1rse]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[2frf\|2frf]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1f\|2v1f]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[1bje\|1bje]], [[1dws\|1dws]], [[1hsy\|1hsy]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1wla\|1wla]], [[1xch\|1xch]], [[1ymc\|1ymc]], [[2fri\|2fri]], [[2v1k\|2v1k]], [[2vlx\|2vlx]], [[2vly\|2vly]], [[2vlz\|2vlz]]</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vm0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm0 PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm0_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Myoglobin has the ability to react with hydrogen peroxide, generating high-valent complexes similar to peroxidases (compounds I and II), and in the presence of excess hydrogen peroxide a third intermediate, compound III, with an oxymyoglobin-type structure is generated from compound II. The compound III is, however, easily one-electron reduced to peroxymyoglobin by synchrotron radiation during crystallographic data collection. We have generated and solved the 1.30 A (1 A=0.1 nm) resolution crystal structure of the peroxymyoglobin intermediate, which is isoelectric to compound 0 and has a Fe-O distance of 1.8 A and O-O bond of 1.3 A in accordance with a Fe(II)-O-O- (or Fe(III)-O-O2-) structure. The generation of the peroxy intermediate through reduction of compound III by X-rays shows the importance of using single-crystal microspectrophotometry when doing crystallography on metalloproteins. After having collected crystallographic data on a peroxy-generated myoglobin crystal, we were able (by a short annealing) to break the O-O bond leading to formation of compound II. These results indicate that the cryoradiolytic-generated peroxymyoglobin is biologically relevant through its conversion into compound II upon heating. Additionally, we have observed that the Xe1 site is occupied by a water molecule, which might be the leaving group in the compound II to compound III reaction.

	~~{{STRUCTURE_2vm0\| PDB=2vm0 \| SCENE= }}~~		The crystal structure of peroxymyoglobin generated through cryoradiolytic reduction of myoglobin compound III during data collection.,Hersleth HP, Hsiao YW, Ryde U, Gorbitz CH, Andersson KK Biochem J. 2008 Jun 1;412(2):257-64. PMID:18215120<ref>PMID:18215120</ref>

	~~===CRYSTAL STRUCTURE OF RADIATION-INDUCED MYOGLOBIN COMPOUND II GENERATED AFTER ANNEALING OF PEROXYMYOGLOBIN===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_18215120}}~~

	~~==About this Structure==~~
	~~[[2vm0]] is~~ a ~~1 chain structure with sequence from [http://en.wikipedia~~.~~org/wiki/Equus_caballus Equus caballus]~~. ~~Full crystallographic information is available from [http://oca~~.~~weizmann.ac.il/oca-bin~~/~~ocashort?id=2VM0 OCA].~~

	==See Also==		==See Also==
	*[[Myoglobin\|Myoglobin]]		*[[Myoglobin\|Myoglobin]]
			== References ==
	==~~Reference~~==		<references/>
	<~~ref group="xtra">PMID:018215120<~~/~~ref~~><~~ref group="xtra">PMID:011935353</ref><references group="xtra"~~/>		__TOC__
			</StructureSection>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
	[[Category: Andersson, K K.]]		[[Category: Andersson, K K.]]

OCA at 22:01, 20 October 2012

2012-10-20T22:01:14Z

← Older revision		Revision as of 22:01, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
	[[2vm0]] is a 1 chain structure ~~of [[Myoglobin]]~~ with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA].		[[2vm0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM0 OCA].

	==See Also==		==See Also==

OCA at 14:59, 27 July 2012

2012-07-27T14:59:11Z

@@ Line 1: / Line 1: @@
 [[Image:2vm0.png|left|200px]]
 {{STRUCTURE_2vm0|  PDB=2vm0  |  SCENE=  }}
 ===CRYSTAL STRUCTURE OF RADIATION-INDUCED MYOGLOBIN COMPOUND II GENERATED AFTER ANNEALING OF PEROXYMYOGLOBIN===
 {{ABSTRACT_PUBMED_18215120}}
@@ Line 22: / Line 11: @@
 ==See Also==
-*[[Myoglobin]]
+*[[Myoglobin|Myoglobin]]
 ==Reference==
@@ Line 30: / Line 19: @@
 [[Category: Gorbitz, C H.]]
 [[Category: Hersleth, H P.]]