2vm2 - Revision history

OCA at 01:27, 21 November 2024

2024-11-21T01:27:04Z

← Older revision		Revision as of 01:27, 21 November 2024
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm2_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm2_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 15:24, 13 December 2023

2023-12-13T15:24:47Z

← Older revision		Revision as of 15:24, 13 December 2023
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	<StructureSection load='2vm2' size='340' side='right'caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2vm2' size='340' side='right'caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Domesticated_barley Domesticated barley~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Hordeum_vulgare_subsp._vulgare Hordeum vulgare subsp. vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>
	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[2vm1\|2vm1]]</div></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
	~~<tr~~ id~~='activity'><td class="sblockLbl"><b>Activity:</b></td><td class~~="~~sblockDat~~">~~<span class='plainlinks'>[https://en.wikipedia.org/wiki/Thioredoxin~~-~~disulfide_reductase Thioredoxin-disulfide reductase]~~, ~~with EC number~~ [~~https://www.brenda-enzymes.info/php/result_flat.php4?ecno=~~1.8~~.1.9 1.8.1.9] </span>~~</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [https://pdbe.org/2vm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [https://pdbe.org/2vm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm2 ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q7XZK3_HORVV Q7XZK3_HORVV]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Domesticated barley~~]]		[[Category: Hordeum vulgare subsp. vulgare]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: Thioredoxin-disulfide reductase]]~~		[[Category: Finnie C]]
	[[Category: Finnie, C]]		[[Category: Hagglund P]]
	[[Category: Hagglund, P]]		[[Category: Henriksen A]]
	[[Category: Henriksen, A]]		[[Category: Maeda K]]
	[[Category: Maeda, K]]		[[Category: Svensson B]]
	[[Category: Svensson, B]]
	~~[[Category: Oxidoreductase]]~~
	~~[[Category: Protein disulfide reductase]]~~
	~~[[Category: Thioredoxin-fold~~]]

OCA at 11:40, 30 March 2022

2022-03-30T11:40:03Z

← Older revision		Revision as of 11:40, 30 March 2022
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	<StructureSection load='2vm2' size='340' side='right'caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2vm2' size='340' side='right'caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Domesticated_barley Domesticated barley]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Domesticated_barley Domesticated barley]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vm1\|2vm1]]</div></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [~~http~~://pdbe.org/2vm2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vm2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [https://pdbe.org/2vm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:07, 25 June 2020

2020-06-25T08:07:34Z

← Older revision		Revision as of 08:07, 25 June 2020
Line 1:		Line 1:

	==Crystal structure of barley thioredoxin h isoform 1 crystallized using PEG as precipitant==		==Crystal structure of barley thioredoxin h isoform 1 crystallized using PEG as precipitant==
	<StructureSection load='2vm2' size='340' side='right' caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2vm2' size='340' side='right'caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Domesticated_barley Domesticated barley]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Domesticated_barley Domesticated barley]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [http://pdbe.org/2vm2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [http://pdbe.org/2vm2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	==See Also==		==See Also==
	*[[Thioredoxin\|Thioredoxin]]		*[[Thioredoxin 3D structures\|Thioredoxin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Domesticated barley]]		[[Category: Domesticated barley]]
			[[Category: Large Structures]]
	[[Category: Thioredoxin-disulfide reductase]]		[[Category: Thioredoxin-disulfide reductase]]
	[[Category: Finnie, C]]		[[Category: Finnie, C]]

OCA at 20:42, 19 September 2018

2018-09-19T20:42:33Z

← Older revision		Revision as of 20:42, 19 September 2018
Line 1:		Line 1:

	==Crystal structure of barley thioredoxin h isoform 1 crystallized using PEG as precipitant==		==Crystal structure of barley thioredoxin h isoform 1 crystallized using PEG as precipitant==
	<StructureSection load='2vm2' size='340' side='right' caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2vm2' size='340' side='right' caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Horvd Horvd~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Domesticated_barley Domesticated barley]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [http://pdbe.org/2vm2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm2 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [http://pdbe.org/2vm2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vm2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm2_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm2_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Horvd~~]]		[[Category: Domesticated barley]]
	[[Category: Thioredoxin-disulfide reductase]]		[[Category: Thioredoxin-disulfide reductase]]
	[[Category: Finnie, C]]		[[Category: Finnie, C]]

OCA at 07:41, 10 February 2016

2016-02-10T07:41:40Z

← Older revision		Revision as of 07:41, 10 February 2016
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	<StructureSection load='2vm2' size='340' side='right' caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2vm2' size='340' side='right' caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Hordeum_vulgare_subsp._vulgare Hordeum vulgare subsp. vulgare~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Horvd Horvd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm2 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [http://pdbe.org/2vm2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm2 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vm2 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2vm2" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Hordeum vulgare subsp. vulgare~~]]		[[Category: Horvd]]
	[[Category: Thioredoxin-disulfide reductase]]		[[Category: Thioredoxin-disulfide reductase]]
	[[Category: Finnie, C]]		[[Category: Finnie, C]]

OCA at 17:27, 19 January 2015

2015-01-19T17:27:07Z

← Older revision		Revision as of 17:27, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Hordeum_vulgare_subsp._vulgare Hordeum vulgare subsp. vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Hordeum_vulgare_subsp._vulgare Hordeum vulgare subsp. vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm2 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm2 PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	[[Category: Hordeum vulgare subsp. vulgare]]		[[Category: Hordeum vulgare subsp. vulgare]]
	[[Category: Thioredoxin-disulfide reductase]]		[[Category: Thioredoxin-disulfide reductase]]
	[[Category: Finnie, C.]]		[[Category: Finnie, C]]
	[[Category: Hagglund, P.]]		[[Category: Hagglund, P]]
	[[Category: Henriksen, A.]]		[[Category: Henriksen, A]]
	[[Category: Maeda, K.]]		[[Category: Maeda, K]]
	[[Category: Svensson, B.]]		[[Category: Svensson, B]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Protein disulfide reductase]]		[[Category: Protein disulfide reductase]]
	[[Category: Thioredoxin-fold]]		[[Category: Thioredoxin-fold]]

OCA at 09:40, 29 September 2014

2014-09-29T09:40:42Z

← Older revision		Revision as of 09:40, 29 September 2014
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	[[Image:~~2vm2~~.~~png~~\|~~left~~\|~~200px~~]]		==Crystal structure of barley thioredoxin h isoform 1 crystallized using PEG as precipitant==
			<StructureSection load='2vm2' size='340' side='right' caption='[[2vm2]], [[Resolution\|resolution]] 1.80Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Hordeum_vulgare_subsp._vulgare Hordeum vulgare subsp. vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VM2 FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm1\|2vm1]]</td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thioredoxin-disulfide_reductase Thioredoxin-disulfide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.1.9 1.8.1.9] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vm2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vm2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vm2 PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vm2_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			H-type thioredoxins (Trxs) constitute a particularly large Trx sub-group in higher plants. Here, the crystal structures are determined for the two barley Trx h isoforms, HvTrxh1 and HvTrxh2, in the partially radiation-reduced state to resolutions of 1.7 A, and for HvTrxh2 in the oxidized state to 2.0 A. The two Trxs have a sequence identity of 51% and highly similar fold and active-site architecture. Interestingly, the four independent molecules in the crystals of HvTrxh1 form two relatively large and essentially identical protein-protein interfaces. In each interface, a loop segment of one HvTrxh1 molecule is positioned along a shallow hydrophobic groove at the primary nucleophile Cys40 of another HvTrxh1 molecule. The association mode can serve as a model for the target protein recognition by Trx, as it brings the Met82 Cgamma atom (gamma position as a disulfide sulfur) of the bound loop segment in the proximity of the Cys40 thiol. The interaction involves three characteristic backbone-backbone hydrogen bonds in an antiparallel beta-sheet-like arrangement, similar to the arrangement observed in the structure of an engineered, covalently bound complex between Trx and a substrate protein, as reported by Maeda et al. in an earlier paper. The occurrence of an intermolecular salt bridge between Glu80 of the bound loop segment and Arg101 near the hydrophobic groove suggests that charge complementarity plays a role in the specificity of Trx. In HvTrxh2, isoleucine corresponds to this arginine, which emphasizes the potential for specificity differences between the coexisting barley Trx isoforms.

	~~{{STRUCTURE_2vm2\| PDB=2vm2 \| SCENE= }}~~		Crystal structures of barley thioredoxin h isoforms HvTrxh1 and HvTrxh2 reveal features involved in protein recognition and possibly in discriminating the isoform specificity.,Maeda K, Hagglund P, Finnie C, Svensson B, Henriksen A Protein Sci. 2008 Jun;17(6):1015-24. Epub 2008 Apr 18. PMID:18424513<ref>PMID:18424513</ref>

	~~===Crystal structure~~ of ~~barley thioredoxin h isoform 1 crystallized using PEG as precipitant===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_18424513}}~~

	~~==About this Structure==~~
	~~[[2vm2]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Hordeum_vulgare_subsp~~.~~_vulgare Hordeum vulgare subsp. vulgare]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA].~~

	==See Also==		==See Also==
	*[[Thioredoxin\|Thioredoxin]]		*[[Thioredoxin\|Thioredoxin]]
			== References ==
	==~~Reference~~==		<references/>
	<~~ref group="xtra">PMID:018424513<~~/~~ref~~><~~references group="xtra"~~/>		__TOC__
			</StructureSection>
	[[Category: Hordeum vulgare subsp. vulgare]]		[[Category: Hordeum vulgare subsp. vulgare]]
	[[Category: Thioredoxin-disulfide reductase]]		[[Category: Thioredoxin-disulfide reductase]]

OCA at 16:50, 20 October 2012

2012-10-20T16:50:44Z

← Older revision		Revision as of 16:50, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
	[[2vm2]] is a 4 chain structure ~~of [[Thioredoxin]]~~ with sequence from [http://en.wikipedia.org/wiki/Hordeum_vulgare_subsp._vulgare Hordeum vulgare subsp. vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA].		[[2vm2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Hordeum_vulgare_subsp._vulgare Hordeum vulgare subsp. vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VM2 OCA].

	==See Also==		==See Also==

OCA at 23:00, 26 July 2012

2012-07-26T23:00:08Z

← Older revision		Revision as of 23:00, 26 July 2012
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	[[Image:2vm2.png\|left\|200px]]		[[Image:2vm2.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2vm2", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2vm2\| PDB=2vm2 \| SCENE= }}		{{STRUCTURE_2vm2\| PDB=2vm2 \| SCENE= }}

	===Crystal structure of barley thioredoxin h isoform 1 crystallized using PEG as precipitant===		===Crystal structure of barley thioredoxin h isoform 1 crystallized using PEG as precipitant===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_18424513}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 18424513 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_18424513}}		{{ABSTRACT_PUBMED_18424513}}

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	==See Also==		==See Also==
	*[[Thioredoxin]]		*[[Thioredoxin\|Thioredoxin]]

	==Reference==		==Reference==