2vmc - Revision history

OCA at 15:24, 13 December 2023

2023-12-13T15:24:56Z

← Older revision		Revision as of 15:24, 13 December 2023
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	<StructureSection load='2vmc' size='340' side='right'caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2vmc' size='340' side='right'caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Dictyostelium_discoideum_ax2~~ Dictyostelium discoideum ~~ax2~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VMC FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum_AX2 Dictyostelium discoideum AX2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VMC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</div~~></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [https://pdbe.org/2vmc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [https://www.ebi.ac.uk/pdbsum/2vmc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [https://pdbe.org/2vmc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [https://www.ebi.ac.uk/pdbsum/2vmc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/DIS2_DICDI DIS2_DICDI]] Galactose-binding lectin. May be necessary for the primary process of spore formation and may be involved in spore coat formation.		[https://www.uniprot.org/uniprot/DIS2_DICDI DIS2_DICDI] Galactose-binding lectin. May be necessary for the primary process of spore formation and may be involved in spore coat formation.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Dictyostelium discoideum ~~ax2~~]]		[[Category: Dictyostelium discoideum AX2]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Imberty, A]]		[[Category: Imberty A]]
	[[Category: Saboia, K]]		[[Category: Saboia K]]
	[[Category: Satre, M]]		[[Category: Satre M]]
	[[Category: Varrot, A]]		[[Category: Varrot A]]
	~~[[Category: Aggregation]]~~
	~~[[Category: Cell adhesion]]~~
	~~[[Category: Ddr]]~~
	~~[[Category: Lectin~~]]

OCA at 11:40, 30 March 2022

2022-03-30T11:40:15Z

← Older revision		Revision as of 11:40, 30 March 2022
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	<StructureSection load='2vmc' size='340' side='right'caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2vmc' size='340' side='right'caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Dictyostelium_discoideum_ax2 Dictyostelium discoideum ax2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VMC FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum_ax2 Dictyostelium discoideum ax2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VMC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [~~http~~://pdbe.org/2vmc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vmc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [https://pdbe.org/2vmc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [https://www.ebi.ac.uk/pdbsum/2vmc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/DIS2_DICDI DIS2_DICDI]] Galactose-binding lectin. May be necessary for the primary process of spore formation and may be involved in spore coat formation.		[[https://www.uniprot.org/uniprot/DIS2_DICDI DIS2_DICDI]] Galactose-binding lectin. May be necessary for the primary process of spore formation and may be involved in spore coat formation.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:08, 25 June 2020

2020-06-25T08:08:36Z

← Older revision		Revision as of 08:08, 25 June 2020
Line 1:		Line 1:

	==Structure of the complex of discoidin II from Dictyostelium discoideum with N-acetyl-galactosamine==		==Structure of the complex of discoidin II from Dictyostelium discoideum with N-acetyl-galactosamine==
	<StructureSection load='2vmc' size='340' side='right' caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2vmc' size='340' side='right'caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum_ax2 Dictyostelium discoideum ax2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VMC FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum_ax2 Dictyostelium discoideum ax2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VMC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [http://pdbe.org/2vmc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [http://www.ebi.ac.uk/pdbsum/2vmc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [http://pdbe.org/2vmc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [http://www.ebi.ac.uk/pdbsum/2vmc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</StructureSection>		</StructureSection>
	[[Category: Dictyostelium discoideum ax2]]		[[Category: Dictyostelium discoideum ax2]]
			[[Category: Large Structures]]
	[[Category: Imberty, A]]		[[Category: Imberty, A]]
	[[Category: Saboia, K]]		[[Category: Saboia, K]]

OCA at 21:04, 19 September 2018

2018-09-19T21:04:13Z

← Older revision		Revision as of 21:04, 19 September 2018
Line 1:		Line 1:
	==~~STRUCTURE OF THE COMPLEX OF DISCOIDIN~~ II ~~FROM DICTYOSTELIUM DISCOIDEUM WITH~~ N-~~ACETYL~~-~~GALACTOSAMINE~~==
			==Structure of the complex of discoidin II from Dictyostelium discoideum with N-acetyl-galactosamine==
	<StructureSection load='2vmc' size='340' side='right' caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2vmc' size='340' side='right' caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum_ax2 Dictyostelium discoideum ax2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMC FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum_ax2 Dictyostelium discoideum ax2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=CA:~~CALCIUM+ION~~'>CA</scene>, <scene name='pdbligand=CL:~~CHLORIDE~~+ION'>CL</scene>, <scene name='pdbligand=~~EDO~~:~~1,2-ETHANEDIOL~~'>~~EDO~~</scene>, <scene name='pdbligand=~~A2G~~:~~N-ACETYL-~~2-~~DEOXY-2-AMINO-GALACTOSE~~'>~~A2G~~</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [http://pdbe.org/2vmc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [http://www.ebi.ac.uk/pdbsum/2vmc PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [http://pdbe.org/2vmc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [http://www.ebi.ac.uk/pdbsum/2vmc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vmc_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vmc_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:36, 10 February 2016

2016-02-10T06:36:34Z

← Older revision		Revision as of 06:36, 10 February 2016
Line 2:		Line 2:
	<StructureSection load='2vmc' size='340' side='right' caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2vmc' size='340' side='right' caption='[[2vmc]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Dictyostelium_discoideum~~ Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMC FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum_ax2 Dictyostelium discoideum ax2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [http://www.ebi.ac.uk/pdbsum/2vmc PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [http://pdbe.org/2vmc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [http://www.ebi.ac.uk/pdbsum/2vmc PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vmc ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2vmc" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Dictyostelium discoideum]]		[[Category: Dictyostelium discoideum ax2]]
	[[Category: Imberty, A]]		[[Category: Imberty, A]]
	[[Category: Saboia, K]]		[[Category: Saboia, K]]

OCA at 12:29, 25 December 2014

2014-12-25T12:29:04Z

← Older revision		Revision as of 12:29, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMC FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vmc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMC FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vm9\|2vm9]], [[2vme\|2vme]], [[2vmd\|2vmd]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [http://www.ebi.ac.uk/pdbsum/2vmc PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vmc RCSB], [http://www.ebi.ac.uk/pdbsum/2vmc PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/DIS2_DICDI DIS2_DICDI]] Galactose-binding lectin. May be necessary for the primary process of spore formation and may be involved in spore coat formation.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Dictyostelium discoideum]]		[[Category: Dictyostelium discoideum]]
	[[Category: Imberty, A.]]		[[Category: Imberty, A]]
	[[Category: Saboia, K.]]		[[Category: Saboia, K]]
	[[Category: Satre, M.]]		[[Category: Satre, M]]
	[[Category: Varrot, A.]]		[[Category: Varrot, A]]
	[[Category: Aggregation]]		[[Category: Aggregation]]
	[[Category: Cell adhesion]]		[[Category: Cell adhesion]]
	[[Category: Ddr]]		[[Category: Ddr]]
	[[Category: Lectin]]		[[Category: Lectin]]

OCA at 04:19, 3 October 2014

2014-10-03T04:19:00Z

@@ Line 1: / Line 1: @@
-{{STRUCTURE_2vmc|  PDB=2vmc  |  SCENE=  }}
+==STRUCTURE OF THE COMPLEX OF DISCOIDIN II FROM DICTYOSTELIUM DISCOIDEUM WITH N-ACETYL-GALACTOSAMINE==
-===STRUCTURE OF THE COMPLEX OF DISCOIDIN II FROM DICTYOSTELIUM DISCOIDEUM WITH N-ACETYL-GALACTOSAMINE===
+<StructureSection load='2vmc' size='340' side='right' caption='[[2vmc]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-{{ABSTRACT_PUBMED_18384150}}
+== Structural highlights ==
-==About this Structure==
+Structure determination of Discoidin II from Dictyostelium discoideum and carbohydrate binding properties of the lectin domain.,Aragao KS, Satre M, Imberty A, Varrot A Proteins. 2008 Oct;73(1):43-52. PMID:18384150<ref>PMID:18384150</ref>
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<ref group="xtra">PMID:018384150</ref><references group="xtra"/><references/>
+</div>
 [[Category: Dictyostelium discoideum]]
 [[Category: Imberty, A.]]

OCA at 23:09, 10 April 2013

2013-04-10T23:09:10Z

@@ Line 1: / Line 1: @@
 {{STRUCTURE_2vmc|  PDB=2vmc  |  SCENE=  }}
 ===STRUCTURE OF THE COMPLEX OF DISCOIDIN II FROM DICTYOSTELIUM DISCOIDEUM WITH N-ACETYL-GALACTOSAMINE===
 {{ABSTRACT_PUBMED_18384150}}
@@ Line 22: / Line 7: @@
 ==Reference==
-<ref group="xtra">PMID:018384150</ref><references group="xtra"/>
+<ref group="xtra">PMID:018384150</ref><references group="xtra"/><references/>
 [[Category: Dictyostelium discoideum]]
 [[Category: Imberty, A.]]
@@ Line 28: / Line 13: @@
 [[Category: Satre, M.]]
 [[Category: Varrot, A.]]

OCA: Protected "2vmc" [edit=sysop:move=sysop]

2011-06-08T04:34:00Z

Protected "2vmc" [edit=sysop:move=sysop]

← Older revision	Revision as of 04:34, 8 June 2011
(No difference)

OCA at 04:33, 8 June 2011

2011-06-08T04:33:58Z

← Older revision		Revision as of 04:33, 8 June 2011
Line 1:		Line 1:
	~~{{Seed}}~~
	[[Image:2vmc.png\|left\|200px]]		[[Image:2vmc.png\|left\|200px]]

Line 12:		Line 11:
	===STRUCTURE OF THE COMPLEX OF DISCOIDIN II FROM DICTYOSTELIUM DISCOIDEUM WITH N-ACETYL-GALACTOSAMINE===		===STRUCTURE OF THE COMPLEX OF DISCOIDIN II FROM DICTYOSTELIUM DISCOIDEUM WITH N-ACETYL-GALACTOSAMINE===


			<!--
			The line below this paragraph, {{ABSTRACT_PUBMED_18384150}}, adds the Publication Abstract to the page
			(as it appears on PubMed at http://www.pubmed.gov), where 18384150 is the PubMed ID number.
			-->
			{{ABSTRACT_PUBMED_18384150}}

	==About this Structure==		==About this Structure==
	~~2VMC~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA].		[[2vmc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMC OCA].

			==Reference==
			<ref group="xtra">PMID:018384150</ref><references group="xtra"/>
	[[Category: Dictyostelium discoideum]]		[[Category: Dictyostelium discoideum]]
	~~[[Category: Aragao, K S.]]~~
	[[Category: Imberty, A.]]		[[Category: Imberty, A.]]
			[[Category: Saboia, K.]]
	[[Category: Satre, M.]]		[[Category: Satre, M.]]
	[[Category: Varrot, A.]]		[[Category: Varrot, A.]]
	~~[[Category: Aggregation]]~~
	~~[[Category: Cell adhesion]]~~
	~~[[Category: Ddr]]~~
	~~[[Category: Lectin]]~~

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:11:35 2009''~~