2wdf - Revision history

OCA at 15:52, 13 December 2023

2023-12-13T15:52:52Z

← Older revision		Revision as of 15:52, 13 December 2023
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	<StructureSection load='2wdf' size='340' side='right'caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>		<StructureSection load='2wdf' size='340' side='right'caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Thet2 Thet2~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WDF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WDF FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>~~, ~~<scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.08Å</td></tr>
	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]~~</~~div~~><~~/td></tr>~~		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene></td></tr>
	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1]~~ </~~span~~></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [https://pdbe.org/2wdf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [https://www.ebi.ac.uk/pdbsum/2wdf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wdf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [https://pdbe.org/2wdf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [https://www.ebi.ac.uk/pdbsum/2wdf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wdf ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q72IT0_THET2 Q72IT0_THET2]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Hydrolase]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Thet2~~]]		[[Category: Thermus thermophilus HB27]]
	[[Category: Antrobus, R]]		[[Category: Antrobus R]]
	[[Category: Berks~~, B C~~]]		[[Category: Berks BC]]
	[[Category: Garman~~, E F~~]]		[[Category: Garman EF]]
	[[Category: Lea~~, S M~~]]		[[Category: Lea SM]]
	[[Category: Leath~~, K J~~]]		[[Category: Leath KJ]]
	[[Category: Roversi, P]]		[[Category: Roversi P]]
	[[Category: Sauve, V]]		[[Category: Sauve V]]
	~~[[Category: Cys s-thiosulfonate]]~~
	~~[[Category: Sox]]~~
	~~[[Category: Soxb]]~~
	~~[[Category: Sulfur oxidation pathway]]~~
	~~[[Category: Sulfur-sulfur hydrolysis~~]]

OCA at 10:53, 7 July 2021

2021-07-07T10:53:53Z

← Older revision		Revision as of 10:53, 7 July 2021
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	<StructureSection load='2wdf' size='340' side='right'caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>		<StructureSection load='2wdf' size='340' side='right'caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thet2 Thet2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2WDF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet2 Thet2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WDF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]</div></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [~~http~~://pdbe.org/2wdf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2wdf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2wdf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [https://pdbe.org/2wdf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [https://www.ebi.ac.uk/pdbsum/2wdf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wdf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:34, 21 August 2019

2019-08-21T07:34:31Z

← Older revision		Revision as of 07:34, 21 August 2019
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	==Termus thermophilus Sulfate thiohydrolase SoxB==		==Termus thermophilus Sulfate thiohydrolase SoxB==
	<StructureSection load='2wdf' size='340' side='right' caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>		<StructureSection load='2wdf' size='340' side='right'caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet2 Thet2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WDF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet2 Thet2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WDF FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/2wdf_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/2wdf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	</StructureSection>		</StructureSection>
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
			[[Category: Large Structures]]
	[[Category: Thet2]]		[[Category: Thet2]]
	[[Category: Antrobus, R]]		[[Category: Antrobus, R]]

OCA at 07:28, 16 November 2017

2017-11-16T07:28:50Z

← Older revision		Revision as of 07:28, 16 November 2017
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	==~~TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB~~==
			==Termus thermophilus Sulfate thiohydrolase SoxB==
	<StructureSection load='2wdf' size='340' side='right' caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>		<StructureSection load='2wdf' size='340' side='right' caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [http://pdbe.org/2wdf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [http://www.ebi.ac.uk/pdbsum/2wdf PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [http://pdbe.org/2wdf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [http://www.ebi.ac.uk/pdbsum/2wdf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wdf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 00:08, 10 February 2016

2016-02-10T00:08:08Z

← Older revision		Revision as of 00:08, 10 February 2016
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	<StructureSection load='2wdf' size='340' side='right' caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>		<StructureSection load='2wdf' size='340' side='right' caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WDF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet2 Thet2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WDF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [http://www.ebi.ac.uk/pdbsum/2wdf PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [http://pdbe.org/2wdf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [http://www.ebi.ac.uk/pdbsum/2wdf PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wdf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 2wdf" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: ~~Thermus thermophilus~~]]		[[Category: Thet2]]
	[[Category: Antrobus, R]]		[[Category: Antrobus, R]]
	[[Category: Berks, B C]]		[[Category: Berks, B C]]

OCA at 10:37, 20 January 2015

2015-01-20T10:37:46Z

← Older revision		Revision as of 10:37, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WDF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WDF FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [http://www.ebi.ac.uk/pdbsum/2wdf PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [http://www.ebi.ac.uk/pdbsum/2wdf PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Antrobus, R.]]		[[Category: Antrobus, R]]
	[[Category: Berks, B C.]]		[[Category: Berks, B C]]
	[[Category: Garman, E F.]]		[[Category: Garman, E F]]
	[[Category: Lea, S M.]]		[[Category: Lea, S M]]
	[[Category: Leath, K J.]]		[[Category: Leath, K J]]
	[[Category: Roversi, P.]]		[[Category: Roversi, P]]
	[[Category: Sauve, V.]]		[[Category: Sauve, V]]
	[[Category: Cys s-thiosulfonate]]		[[Category: Cys s-thiosulfonate]]
	~~[[Category: Hydrolase]]~~
	[[Category: Sox]]		[[Category: Sox]]
	[[Category: Soxb]]		[[Category: Soxb]]
	[[Category: Sulfur oxidation pathway]]		[[Category: Sulfur oxidation pathway]]
	[[Category: Sulfur-sulfur hydrolysis]]		[[Category: Sulfur-sulfur hydrolysis]]

OCA at 01:34, 1 October 2014

2014-10-01T01:34:53Z

← Older revision		Revision as of 01:34, 1 October 2014
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	[[Image:~~2wdf~~.~~png~~\|~~left~~\|~~200px~~]]		==TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB==
			<StructureSection load='2wdf' size='340' side='right' caption='[[2wdf]], [[Resolution\|resolution]] 2.08Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[2wdf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WDF FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wde\|2wde]], [[2wdc\|2wdc]], [[2wdd\|2wdd]]</td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.12.2.1 3.12.2.1] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wdf RCSB], [http://www.ebi.ac.uk/pdbsum/2wdf PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/2wdf_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			SoxB is an essential component of the bacterial Sox sulfur oxidation pathway. SoxB contains a di-manganese(II) site and is proposed to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. A direct assay for SoxB activity is described. The structure of recombinant Thermus thermophilus SoxB was determined by x-ray crystallography to a resolution of 1.5 A. Structures were also determined for SoxB in complex with the substrate analogue thiosulfate and in complex with the product sulfate. A mechanistic model for SoxB is proposed based on these structures.

	~~{{STRUCTURE_2wdf\| PDB=2wdf \| SCENE= }}~~		Mechanism for the hydrolysis of a sulfur-sulfur bond based on the crystal structure of the thiosulfohydrolase SoxB.,Sauve V, Roversi P, Leath KJ, Garman EF, Antrobus R, Lea SM, Berks BC J Biol Chem. 2009 Aug 7;284(32):21707-18. Epub 2009 Jun 16. PMID:19535341<ref>PMID:19535341</ref>

	~~===TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_19535341}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[2wdf]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thermus_thermophilus Thermus thermophilus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:019535341<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

OCA: Protected "2wdf" [edit=sysop:move=sysop]

2013-01-07T22:24:53Z

Protected "2wdf" [edit=sysop:move=sysop]

← Older revision	Revision as of 22:24, 7 January 2013
(No difference)

OCA at 22:24, 7 January 2013

2013-01-07T22:24:51Z

← Older revision		Revision as of 22:24, 7 January 2013
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	~~{{Seed}}~~
	[[Image:2wdf.png\|left\|200px]]		[[Image:2wdf.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_2wdf", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_2wdf\| PDB=2wdf \| SCENE= }}		{{STRUCTURE_2wdf\| PDB=2wdf \| SCENE= }}

	===TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB===		===TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB===

			{{ABSTRACT_PUBMED_19535341}}

	==About this Structure==		==About this Structure==
	~~2WDF~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA].		[[2wdf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA].

			==Reference==
			<ref group="xtra">PMID:019535341</ref><references group="xtra"/>
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
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	[[Category: Garman, E F.]]		[[Category: Garman, E F.]]
	[[Category: Lea, S M.]]		[[Category: Lea, S M.]]
	[[Category: Leath, K.]]		[[Category: Leath, K J.]]
	[[Category: Roversi, P.]]		[[Category: Roversi, P.]]
	[[Category: Sauve, V.]]		[[Category: Sauve, V.]]
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	[[Category: Sulfur oxidation pathway]]		[[Category: Sulfur oxidation pathway]]
	[[Category: Sulfur-sulfur hydrolysis]]		[[Category: Sulfur-sulfur hydrolysis]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 12 20:03:40 2009''~~

OCA at 16:57, 12 August 2009

2009-08-12T16:57:23Z

← Older revision		Revision as of 16:57, 12 August 2009
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	===TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB===		===TERMUS THERMOPHILUS SULFATE THIOHYDROLASE SOXB===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_19535341}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 19535341 is the PubMed ID number.~~
	~~-->~~
	~~{{ABSTRACT_PUBMED_19535341}}~~

	==About this Structure==		==About this Structure==
	2WDF is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA].		2WDF is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDF OCA].

	~~==Reference==~~
	~~<ref group="xtra">PMID:19535341</ref><references group="xtra"/>~~
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
Line 30:		Line 21:
	[[Category: Garman, E F.]]		[[Category: Garman, E F.]]
	[[Category: Lea, S M.]]		[[Category: Lea, S M.]]
	[[Category: Leath, K J.]]		[[Category: Leath, K.]]
	[[Category: Roversi, P.]]		[[Category: Roversi, P.]]
	[[Category: Sauve, V.]]		[[Category: Sauve, V.]]
Line 40:		Line 31:
	[[Category: Sulfur-sulfur hydrolysis]]		[[Category: Sulfur-sulfur hydrolysis]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat Jul 4 18~~:11:46 2009''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 12 20:03:40 2009''