3bfb - Revision history

OCA at 05:42, 17 October 2024

2024-10-17T05:42:10Z

← Older revision		Revision as of 05:42, 17 October 2024
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bfb_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bfb_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 14:45, 1 November 2023

2023-11-01T14:45:06Z

← Older revision		Revision as of 14:45, 1 November 2023
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	<StructureSection load='3bfb' size='340' side='right'caption='[[3bfb]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3bfb' size='340' side='right'caption='[[3bfb]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3bfb]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3BFB FirstGlance]. <br>		<table><tr><td colspan='2'>[[3bfb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BFB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.15Å</td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [~~http~~://pdbe.org/3bfb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3bfb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3bfb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [https://pdbe.org/3bfb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [https://www.ebi.ac.uk/pdbsum/3bfb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bfb ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q9U9J6_APIME Q9U9J6_APIME]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Apis mellifera]]		[[Category: Apis mellifera]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Bezirard, V]]		[[Category: Bezirard V]]
	[[Category: Briand, L]]		[[Category: Briand L]]
	[[Category: Cambillau, C]]		[[Category: Cambillau C]]
	[[Category: Pernollet~~, J C~~]]		[[Category: Pernollet JC]]
	[[Category: Pesenti~~, M E~~]]		[[Category: Pesenti ME]]
	[[Category: Spinelli, S]]		[[Category: Spinelli S]]
	[[Category: Tegoni, M]]		[[Category: Tegoni M]]
	~~[[Category: Honeybee]]~~
	~~[[Category: Pheromone binding protein]]~~
	~~[[Category: Pheromone-binding protein]]~~
	~~[[Category: Queen mandibular pheromone]]~~
	~~[[Category: Signal transduction~~]]

OCA at 06:17, 5 August 2020

2020-08-05T06:17:38Z

← Older revision		Revision as of 06:17, 5 August 2020
Line 1:		Line 1:

	==Crystal structure of a pheromone binding protein from Apis mellifera in complex with the 9-keto-2(E)-decenoic acid==		==Crystal structure of a pheromone binding protein from Apis mellifera in complex with the 9-keto-2(E)-decenoic acid==
	<StructureSection load='3bfb' size='340' side='right' caption='[[3bfb]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3bfb' size='340' side='right'caption='[[3bfb]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3bfb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3BFB FirstGlance]. <br>		<table><tr><td colspan='2'>[[3bfb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3BFB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [http://pdbe.org/3bfb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [http://www.ebi.ac.uk/pdbsum/3bfb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bfb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [http://pdbe.org/3bfb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [http://www.ebi.ac.uk/pdbsum/3bfb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bfb ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</StructureSection>		</StructureSection>
	[[Category: Apis mellifera]]		[[Category: Apis mellifera]]
			[[Category: Large Structures]]
	[[Category: Bezirard, V]]		[[Category: Bezirard, V]]
	[[Category: Briand, L]]		[[Category: Briand, L]]

OCA at 08:19, 31 October 2018

2018-10-31T08:19:07Z

← Older revision		Revision as of 08:19, 31 October 2018
Line 1:		Line 1:

	==Crystal structure of a pheromone binding protein from Apis mellifera in complex with the 9-keto-2(E)-decenoic acid==		==Crystal structure of a pheromone binding protein from Apis mellifera in complex with the 9-keto-2(E)-decenoic acid==
	<StructureSection load='3bfb' size='340' side='right' caption='[[3bfb]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3bfb' size='340' side='right' caption='[[3bfb]], [[Resolution\|resolution]] 2.15Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [http://pdbe.org/3bfb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [http://www.ebi.ac.uk/pdbsum/3bfb PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [http://pdbe.org/3bfb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [http://www.ebi.ac.uk/pdbsum/3bfb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bfb ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bfb_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bfb_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 05:41, 7 February 2016

2016-02-07T05:41:37Z

← Older revision		Revision as of 05:41, 7 February 2016
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [http://www.ebi.ac.uk/pdbsum/3bfb PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [http://pdbe.org/3bfb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [http://www.ebi.ac.uk/pdbsum/3bfb PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bfb ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 3bfb" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 09:47, 20 January 2015

2015-01-20T09:47:07Z

← Older revision		Revision as of 09:47, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3bfb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BFB FirstGlance]. <br>		<table><tr><td colspan='2'>[[3bfb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BFB FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [http://www.ebi.ac.uk/pdbsum/3bfb PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [http://www.ebi.ac.uk/pdbsum/3bfb PDBsum]</span></td></tr>
	<table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>

			==See Also==
			*[[Pheromone binding protein\|Pheromone binding protein]]
	== References ==		== References ==
	<references/>		<references/>
Line 30:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Apis mellifera]]		[[Category: Apis mellifera]]
	[[Category: Bezirard, V.]]		[[Category: Bezirard, V]]
	[[Category: Briand, L.]]		[[Category: Briand, L]]
	[[Category: Cambillau, C.]]		[[Category: Cambillau, C]]
	[[Category: Pernollet, J C.]]		[[Category: Pernollet, J C]]
	[[Category: Pesenti, M E.]]		[[Category: Pesenti, M E]]
	[[Category: Spinelli, S.]]		[[Category: Spinelli, S]]
	[[Category: Tegoni, M~~.]]~~		[[Category: Tegoni, M]]
	~~[[Category: Apis mellifera~~]]
	[[Category: Honeybee]]		[[Category: Honeybee]]
	[[Category: Pheromone binding protein]]		[[Category: Pheromone binding protein]]

OCA at 21:32, 2 October 2014

2014-10-02T21:32:54Z

← Older revision		Revision as of 21:32, 2 October 2014
Line 1:		Line 1:
	[[Image:~~3bfb~~.~~png~~\|~~left~~\|~~200px~~]]		==Crystal structure of a pheromone binding protein from Apis mellifera in complex with the 9-keto-2(E)-decenoic acid==
			<StructureSection load='3bfb' size='340' side='right' caption='[[3bfb]], [[Resolution\|resolution]] 2.15Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[3bfb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BFB FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9OD:(2Z)-9-OXODEC-2-ENOIC+ACID'>9OD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r5r\|1r5r]], [[3bfa\|3bfa]], [[3bfh\|3bfh]], [[2h8v\|2h8v]]</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bfb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bfb RCSB], [http://www.ebi.ac.uk/pdbsum/3bfb PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bfb_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The behavior of insects and their perception of their surroundings are driven, in a large part, by odorants and pheromones. This is especially true for social insects, such as the honey bee, where the queen controls the development and the caste status of the other individuals. Pheromone perception is a complex phenomenon relying on a cascade of recognition events, initiated in antennae by pheromone recognition by a pheromone-binding protein and finishing with signal transduction at the axon membrane level. With to the objective of deciphering this initial step, we have determined the structures of the bee antennal pheromone-binding protein (ASP1) in the apo form and in complex with the main component of the queen mandibular pheromonal mixture, 9-keto-2(E)-decenoic acid (9-ODA) and with nonpheromonal components. In the apo protein, the C terminus obstructs the binding site. In contrast, ASP1 complexes have different open conformations, depending on the ligand shape, leading to different volumes of the binding cavity. The binding site integrity depends on the C terminus (111-119) conformation, which involves the interplay of two factors; i.e. the presence of a ligand and a low pH. Ligand binding to ASP1 is favored by low pH, opposite to what is observed with other pheromone-binding proteins, such as those of Bombyx mori and Anopheles gambiae.

	~~{{STRUCTURE_3bfb\| PDB=3bfb \| SCENE= }}~~		Structural basis of the honey bee PBP pheromone and pH-induced conformational change.,Pesenti ME, Spinelli S, Bezirard V, Briand L, Pernollet JC, Tegoni M, Cambillau C J Mol Biol. 2008 Jun 27;380(1):158-69. Epub 2008 Apr 27. PMID:18508083<ref>PMID:18508083</ref>

	~~===Crystal structure~~ of ~~a pheromone binding protein from Apis mellifera in complex with~~ the ~~9-keto-2(E)-decenoic acid===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_18508083}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[3bfb]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Apis_mellifera Apis mellifera]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:018508083<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Apis mellifera]]		[[Category: Apis mellifera]]
	[[Category: Bezirard, V.]]		[[Category: Bezirard, V.]]

OCA: Protected "3bfb" [edit=sysop:move=sysop]

2013-01-07T19:03:49Z

Protected "3bfb" [edit=sysop:move=sysop]

← Older revision	Revision as of 19:03, 7 January 2013
(No difference)

OCA at 19:03, 7 January 2013

2013-01-07T19:03:46Z

← Older revision		Revision as of 19:03, 7 January 2013
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	~~{{Seed}}~~
	[[Image:3bfb.png\|left\|200px]]		[[Image:3bfb.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3bfb", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3bfb\| PDB=3bfb \| SCENE= }}		{{STRUCTURE_3bfb\| PDB=3bfb \| SCENE= }}

	===Crystal structure of a pheromone binding protein from Apis mellifera in complex with the 9-keto-2(E)-decenoic acid===		===Crystal structure of a pheromone binding protein from Apis mellifera in complex with the 9-keto-2(E)-decenoic acid===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_18508083}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 18508083 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_18508083}}		{{ABSTRACT_PUBMED_18508083}}

	==About this Structure==		==About this Structure==
	~~3BFB~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA].		[[3bfb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~18508083~~</ref><references group="xtra"/>		<ref group="xtra">PMID:018508083</ref><references group="xtra"/>
	[[Category: Apis mellifera]]		[[Category: Apis mellifera]]
	[[Category: Bezirard, V.]]		[[Category: Bezirard, V.]]
Line 38:		Line 26:
	[[Category: Queen mandibular pheromone]]		[[Category: Queen mandibular pheromone]]
	[[Category: Signal transduction]]		[[Category: Signal transduction]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 11:42:19 2009''~~

OCA at 09:42, 16 February 2009

2009-02-16T09:42:22Z

← Older revision		Revision as of 09:42, 16 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
	3BFB is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA].		3BFB is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BFB OCA].

	==Reference==		==Reference==
	~~Structural Basis of the Honey Bee PBP Pheromone and pH-induced Conformational Change., Pesenti ME, Spinelli S, Bezirard V, Briand L, Pernollet JC, Tegoni M, Cambillau C, J Mol Biol. 2008 Apr 27;.~~ PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~18508083 18508083]~~		<ref group="xtra">PMID:18508083</ref><references group="xtra"/>
	[[Category: Apis mellifera]]		[[Category: Apis mellifera]]
	~~[[Category: Single protein]]~~
	[[Category: Bezirard, V.]]		[[Category: Bezirard, V.]]
	[[Category: Briand, L.]]		[[Category: Briand, L.]]
Line 40:		Line 39:
	[[Category: Signal transduction]]		[[Category: Signal transduction]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Jul 27 13~~:46:~~31 2008~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 11:42:19 2009''