3cmd - Revision history

OCA at 14:58, 1 November 2023

2023-11-01T14:58:59Z

← Older revision		Revision as of 14:58, 1 November 2023
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	<StructureSection load='3cmd' size='340' side='right'caption='[[3cmd]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='3cmd' size='340' side='right'caption='[[3cmd]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3cmd]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_19434 Atcc 19434~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3CMD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3cmd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CMD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [~~http~~://pdbe.org/3cmd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3cmd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3cmd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [https://pdbe.org/3cmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [https://www.ebi.ac.uk/pdbsum/3cmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cmd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[~~[http~~://www.uniprot.org/uniprot/Q842S4_ENTFC Q842S4_ENTFC]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]		[https://www.uniprot.org/uniprot/Q842S4_ENTFC Q842S4_ENTFC] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Atcc 19434~~]]		[[Category: Enterococcus faecium]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: Peptide deformylase]]~~		[[Category: Hwang KY]]
	[[Category: Hwang~~, K Y~~]]		[[Category: Nam KH]]
	[[Category: Nam~~, K H]]~~
	~~[[Category: Hydrolase]]~~
	~~[[Category: Pdf~~]]

OCA at 10:28, 12 August 2020

2020-08-12T10:28:06Z

← Older revision		Revision as of 10:28, 12 August 2020
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	==Crystal structure of peptide deformylase from VRE-E.faecium==		==Crystal structure of peptide deformylase from VRE-E.faecium==
	<StructureSection load='3cmd' size='340' side='right' caption='[[3cmd]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='3cmd' size='340' side='right'caption='[[3cmd]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_19434 Atcc 19434]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3CMD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_19434 Atcc 19434]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3CMD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [http://pdbe.org/3cmd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [http://www.ebi.ac.uk/pdbsum/3cmd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cmd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [http://pdbe.org/3cmd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [http://www.ebi.ac.uk/pdbsum/3cmd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cmd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</StructureSection>		</StructureSection>
	[[Category: Atcc 19434]]		[[Category: Atcc 19434]]
			[[Category: Large Structures]]
	[[Category: Peptide deformylase]]		[[Category: Peptide deformylase]]
	[[Category: Hwang, K Y]]		[[Category: Hwang, K Y]]

OCA at 13:50, 7 November 2018

2018-11-07T13:50:01Z

← Older revision		Revision as of 13:50, 7 November 2018
Line 1:		Line 1:

	==Crystal structure of peptide deformylase from VRE-E.faecium==		==Crystal structure of peptide deformylase from VRE-E.faecium==
	<StructureSection load='3cmd' size='340' side='right' caption='[[3cmd]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='3cmd' size='340' side='right' caption='[[3cmd]], [[Resolution\|resolution]] 2.70Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [http://pdbe.org/3cmd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [http://www.ebi.ac.uk/pdbsum/3cmd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [http://pdbe.org/3cmd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [http://www.ebi.ac.uk/pdbsum/3cmd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cmd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/3cmd_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/3cmd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:52, 9 February 2016

2016-02-09T04:52:58Z

← Older revision		Revision as of 04:52, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3cmd' size='340' side='right' caption='[[3cmd]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='3cmd' size='340' side='right' caption='[[3cmd]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterococcus_faecium Enterococcus faecium~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CMD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_19434 Atcc 19434]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CMD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [http://www.ebi.ac.uk/pdbsum/3cmd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [http://pdbe.org/3cmd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [http://www.ebi.ac.uk/pdbsum/3cmd PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cmd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Enterococcus faecium~~]]		[[Category: Atcc 19434]]
	[[Category: Peptide deformylase]]		[[Category: Peptide deformylase]]
	[[Category: Hwang, K Y]]		[[Category: Hwang, K Y]]

OCA at 04:33, 25 December 2014

2014-12-25T04:33:38Z

← Older revision		Revision as of 04:33, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CMD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CMD FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [http://www.ebi.ac.uk/pdbsum/3cmd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [http://www.ebi.ac.uk/pdbsum/3cmd PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/Q842S4_ENTFC Q842S4_ENTFC]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Enterococcus faecium]]		[[Category: Enterococcus faecium]]
	[[Category: Peptide deformylase]]		[[Category: Peptide deformylase]]
	[[Category: Hwang, K Y.]]		[[Category: Hwang, K Y]]
	[[Category: Nam, K H.]]		[[Category: Nam, K H]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Pdf]]		[[Category: Pdf]]

OCA at 21:23, 2 October 2014

2014-10-02T21:23:57Z

← Older revision		Revision as of 21:23, 2 October 2014
Line 1:		Line 1:
	~~[[Image:3cmd.png\|left\|200px]]~~		==Crystal structure of peptide deformylase from VRE-E.faecium==
			<StructureSection load='3cmd' size='340' side='right' caption='[[3cmd]], [[Resolution\|resolution]] 2.70Å' scene=''>
	~~{{STRUCTURE_3cmd\| PDB=3cmd \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[3cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CMD FirstGlance]. <br>
	===Crystal structure of peptide deformylase from VRE-E.faecium===		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cmd RCSB], [http://www.ebi.ac.uk/pdbsum/3cmd PDBsum]</span></td></tr>
	==~~About this Structure~~==		<table>
	[[3cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA].		== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/3cmd_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Enterococcus faecium]]		[[Category: Enterococcus faecium]]
	[[Category: Peptide deformylase]]		[[Category: Peptide deformylase]]

OCA: Protected "3cmd" [edit=sysop:move=sysop]

2013-01-07T20:20:39Z

Protected "3cmd" [edit=sysop:move=sysop]

← Older revision	Revision as of 20:20, 7 January 2013
(No difference)

OCA at 20:20, 7 January 2013

2013-01-07T20:20:35Z

← Older revision		Revision as of 20:20, 7 January 2013
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	~~{{Seed}}~~		[[Image:3cmd.png\|left\|200px]]
	[[Image:3cmd.~~jpg~~\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3cmd", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3cmd\| PDB=3cmd \| SCENE= }}		{{STRUCTURE_3cmd\| PDB=3cmd \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
	~~3CMD~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA].		[[3cmd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA].

	~~==Reference==~~
	Insight into the antibacterial drug design and architectural mechanism of peptide recognition from the E. faecium peptide deformylase structure., Nam KH, Ham JI, Priyadarshi A, Kim EE, Chung N, Hwang KY, Proteins. 2009 Jan;74(1):261-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18831047 18831047]
	[[Category: Enterococcus faecium]]		[[Category: Enterococcus faecium]]
	[[Category: Peptide deformylase]]		[[Category: Peptide deformylase]]
Line 24:		Line 14:
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Pdf]]		[[Category: Pdf]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 14 13:17:58 2009''~~

OCA at 11:17, 14 January 2009

2009-01-14T11:17:59Z

← Older revision		Revision as of 11:17, 14 January 2009
Line 1:		Line 1:
	~~'''Unreleased structure'''~~		{{Seed}}
			[[Image:3cmd.jpg\|left\|200px]]

	The ~~entry~~ 3cmd ~~is ON HOLD~~ ~~until Paper Publication~~		<!--
			The line below this paragraph, containing "STRUCTURE_3cmd", creates the "Structure Box" on the page.
			You may change the PDB parameter (which sets the PDB file loaded into the applet)
			or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
			or leave the SCENE parameter empty for the default display.
			-->
			{{STRUCTURE_3cmd\| PDB=3cmd \| SCENE= }}

	~~Authors: Hwang, K.Y., Nam, K.H~~.		===Crystal structure of peptide deformylase from VRE-E.faecium===

	~~Description: Crystal structure of peptide deformylase from VRE-E.faecium~~

			==About this Structure==
			3CMD is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMD OCA].

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jun 11 09~~:32:~~43 2008~~''		==Reference==
			Insight into the antibacterial drug design and architectural mechanism of peptide recognition from the E. faecium peptide deformylase structure., Nam KH, Ham JI, Priyadarshi A, Kim EE, Chung N, Hwang KY, Proteins. 2009 Jan;74(1):261-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18831047 18831047]
			[[Category: Enterococcus faecium]]
			[[Category: Peptide deformylase]]
			[[Category: Hwang, K Y.]]
			[[Category: Nam, K H.]]
			[[Category: Hydrolase]]
			[[Category: Pdf]]

			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 14 13:17:58 2009''

OCA: New page: '''Unreleased structure''' The entry 3cmd is ON HOLD until Paper Publication Authors: Hwang, K.Y., Nam, K.H. Description: Crystal structure of peptide deformylase from VRE-E.faecium ...

2008-06-11T06:32:44Z

New page: '''Unreleased structure''' The entry 3cmd is ON HOLD until Paper Publication Authors: Hwang, K.Y., Nam, K.H. Description: Crystal structure of peptide deformylase from VRE-E.faecium ...

New page

'''Unreleased structure'''

The entry 3cmd is ON HOLD until Paper Publication

Authors: Hwang, K.Y., Nam, K.H.

Description: Crystal structure of peptide deformylase from VRE-E.faecium

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 11 09:32:43 2008''