3csv - Revision history

OCA at 09:46, 6 November 2024

2024-11-06T09:46:07Z

← Older revision		Revision as of 09:46, 6 November 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_sp._TM1040 Ruegeria sp. TM1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_sp._TM1040 Ruegeria sp. TM1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CSV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.15Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [https://pdbe.org/3csv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [https://www.ebi.ac.uk/pdbsum/3csv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3csv ProSAT], [https://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [https://pdbe.org/3csv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [https://www.ebi.ac.uk/pdbsum/3csv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3csv ProSAT], [https://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>
	</table>		</table>
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cs/3csv_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cs/3csv_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 11:30, 1 February 2023

2023-02-01T11:30:53Z

← Older revision		Revision as of 11:30, 1 February 2023
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	<StructureSection load='3csv' size='340' side='right'caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3csv' size='340' side='right'caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ruest Ruest~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_sp._TM1040 Ruegeria sp. TM1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CSV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:~~SODIUM+ION~~'>NA</scene>, <scene name='pdbligand=~~SO4~~:~~SULFATE~~+ION'>~~SO4~~</scene>, <scene name='pdbligand=ZN:~~ZINC~~+ION'>ZN</scene>~~</td></tr>~~		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_614837.1, TM1040_2843 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292414 RUEST])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [https://pdbe.org/3csv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [https://www.ebi.ac.uk/pdbsum/3csv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3csv ProSAT], [https://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [https://pdbe.org/3csv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [https://www.ebi.ac.uk/pdbsum/3csv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3csv ProSAT], [https://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q1GCP1_RUEST Q1GCP1_RUEST]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Ruest]]~~		[[Category: Ruegeria sp. TM1040]]
	~~[[Category: Structural genomic]]~~
	~~[[Category: Jcsg]]~~
	~~[[Category: Phosphotransferase enzyme family]]~~
	~~[[Category: PSI, Protein structure initiative]]~~
	~~[[Category: Putative aminoglycoside phosphotransferase]]~~
	~~[[Category: Transferase]]~~
	~~[[Category: Yp_614837 1~~]]

OCA at 07:43, 2 February 2022

2022-02-02T07:43:52Z

← Older revision		Revision as of 07:43, 2 February 2022
Line 3:		Line 3:
	<StructureSection load='3csv' size='340' side='right'caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3csv' size='340' side='right'caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ruest Ruest]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3CSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruest Ruest]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CSV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_614837.1, TM1040_2843 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292414 RUEST])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_614837.1, TM1040_2843 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292414 RUEST])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [~~http~~://pdbe.org/3csv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3csv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3csv ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [https://pdbe.org/3csv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [https://www.ebi.ac.uk/pdbsum/3csv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3csv ProSAT], [https://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:54, 24 July 2019

2019-07-24T07:54:18Z

← Older revision		Revision as of 07:54, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of a putative aminoglycoside phosphotransferase (YP_614837.1) from Silicibacter sp. TM1040 at 2.15 A resolution==		==Crystal structure of a putative aminoglycoside phosphotransferase (YP_614837.1) from Silicibacter sp. TM1040 at 2.15 A resolution==
	<StructureSection load='3csv' size='340' side='right' caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3csv' size='340' side='right'caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruest Ruest]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruest Ruest]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CSV FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cs/3csv_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cs/3csv_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Ruest]]		[[Category: Ruest]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 08:34, 25 October 2017

2017-10-25T08:34:22Z

← Older revision		Revision as of 08:34, 25 October 2017
Line 1:		Line 1:

	==Crystal structure of a putative aminoglycoside phosphotransferase (YP_614837.1) from Silicibacter sp. TM1040 at 2.15 A resolution==		==Crystal structure of a putative aminoglycoside phosphotransferase (YP_614837.1) from Silicibacter sp. TM1040 at 2.15 A resolution==
	<StructureSection load='3csv' size='340' side='right' caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3csv' size='340' side='right' caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_614837.1, TM1040_2843 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292414 RUEST])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_614837.1, TM1040_2843 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292414 RUEST])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [http://pdbe.org/3csv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [http://www.ebi.ac.uk/pdbsum/3csv PDBsum], [http://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [http://pdbe.org/3csv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [http://www.ebi.ac.uk/pdbsum/3csv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3csv ProSAT], [http://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 00:28, 10 February 2016

2016-02-10T00:28:49Z

← Older revision		Revision as of 00:28, 10 February 2016
Line 2:		Line 2:
	<StructureSection load='3csv' size='340' side='right' caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3csv' size='340' side='right' caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Ruegeria_sp._tm1040 Ruegeria sp. tm1040~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruest Ruest]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CSV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_614837.1, TM1040_2843 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292414 ~~Ruegeria sp. TM1040~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_614837.1, TM1040_2843 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292414 RUEST])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [http://www.ebi.ac.uk/pdbsum/3csv PDBsum], [http://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [http://pdbe.org/3csv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [http://www.ebi.ac.uk/pdbsum/3csv PDBsum], [http://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3csv ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Ruegeria sp. tm1040~~]]		[[Category: Ruest]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]

OCA at 10:49, 20 January 2015

2015-01-20T10:49:40Z

← Older revision		Revision as of 10:49, 20 January 2015
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Ruegeria sp. tm1040]]		[[Category: Ruegeria sp. tm1040]]
	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	~~[[Category: Joint center for structural genomic]]~~
	[[Category: Phosphotransferase enzyme family]]		[[Category: Phosphotransferase enzyme family]]
	[[Category: Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	~~[[Category: Psi-2~~]]
	[[Category: Putative aminoglycoside phosphotransferase]]		[[Category: Putative aminoglycoside phosphotransferase]]
	~~[[Category: Structural genomic]]~~
	[[Category: Transferase]]		[[Category: Transferase]]
	[[Category: Yp_614837 1]]		[[Category: Yp_614837 1]]

OCA at 06:13, 10 October 2014

2014-10-10T06:13:41Z

← Older revision		Revision as of 06:13, 10 October 2014
Line 1:		Line 1:
	~~[[Image:3csv.png\|left\|200px]]~~		==Crystal structure of a putative aminoglycoside phosphotransferase (YP_614837.1) from Silicibacter sp. TM1040 at 2.15 A resolution==
			<StructureSection load='3csv' size='340' side='right' caption='[[3csv]], [[Resolution\|resolution]] 2.15Å' scene=''>
	~~{{STRUCTURE_3csv\| PDB=3csv \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[3csv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruegeria_sp._tm1040 Ruegeria sp. tm1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CSV FirstGlance]. <br>
	===Crystal structure of a putative aminoglycoside phosphotransferase (YP_614837.1) from Silicibacter sp. TM1040 at 2.15 A resolution===		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
			<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_614837.1, TM1040_2843 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=292414 Ruegeria sp. TM1040])</td></tr>
	==~~About this Structure~~==		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3csv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3csv RCSB], [http://www.ebi.ac.uk/pdbsum/3csv PDBsum], [http://www.topsan.org/Proteins/JCSG/3csv TOPSAN]</span></td></tr>
	[[3csv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruegeria_sp._tm1040 Ruegeria sp. tm1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA].		</table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cs/3csv_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Ruegeria sp. tm1040]]		[[Category: Ruegeria sp. tm1040]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: Protected "3csv" [edit=sysop:move=sysop]

2013-01-07T22:33:07Z

Protected "3csv" [edit=sysop:move=sysop]

← Older revision	Revision as of 22:33, 7 January 2013
(No difference)

OCA at 22:33, 7 January 2013

2013-01-07T22:33:03Z

← Older revision		Revision as of 22:33, 7 January 2013
Line 1:		Line 1:
	~~{{Seed}}~~
	[[Image:3csv.png\|left\|200px]]		[[Image:3csv.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3csv", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3csv\| PDB=3csv \| SCENE= }}		{{STRUCTURE_3csv\| PDB=3csv \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
	~~3CSV~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Silicibacter_sp~~._tm1040 ~~Silicibacter~~ sp. tm1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA].		[[3csv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruegeria_sp._tm1040 Ruegeria sp. tm1040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSV OCA].
	[[Category: ~~Silicibacter~~ sp. tm1040]]		[[Category: Ruegeria sp. tm1040]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
Line 24:		Line 17:
	[[Category: Putative aminoglycoside phosphotransferase]]		[[Category: Putative aminoglycoside phosphotransferase]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
			[[Category: Transferase]]
	[[Category: Yp_614837 1]]		[[Category: Yp_614837 1]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:44:46 2008''~~