3dee - Revision history

OCA at 07:55, 9 October 2024

2024-10-09T07:55:13Z

← Older revision		Revision as of 07:55, 9 October 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_FA_1090 Neisseria gonorrhoeae FA 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEE FirstGlance]. <br>		<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_FA_1090 Neisseria gonorrhoeae FA 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [https://pdbe.org/3dee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [https://www.ebi.ac.uk/pdbsum/3dee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dee ProSAT], [https://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [https://pdbe.org/3dee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [https://www.ebi.ac.uk/pdbsum/3dee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dee ProSAT], [https://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>
	</table>		</table>
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dee_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dee_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>

OCA at 11:32, 1 February 2023

2023-02-01T11:32:49Z

← Older revision		Revision as of 11:32, 1 February 2023
Line 3:		Line 3:
	<StructureSection load='3dee' size='340' side='right'caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3dee' size='340' side='right'caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Neig1 Neig1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEE FirstGlance]. <br>		<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_FA_1090 Neisseria gonorrhoeae FA 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>~~</td></tr>~~		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_208969.1, NGO1945 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 NEIG1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [https://pdbe.org/3dee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [https://www.ebi.ac.uk/pdbsum/3dee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dee ProSAT], [https://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [https://pdbe.org/3dee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [https://www.ebi.ac.uk/pdbsum/3dee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dee ProSAT], [https://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q5F5I0_NEIG1 Q5F5I0_NEIG1]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Neig1]]~~		[[Category: Neisseria gonorrhoeae FA 1090]]
	~~[[Category: Structural genomic]]~~
	~~[[Category: Jcsg]]~~
	~~[[Category: PSI, Protein structure initiative]]~~
	~~[[Category: Putative regulatory protein]]~~
	~~[[Category: Transcription~~]]

OCA at 07:56, 9 February 2022

2022-02-09T07:56:48Z

← Older revision		Revision as of 07:56, 9 February 2022
Line 3:		Line 3:
	<StructureSection load='3dee' size='340' side='right'caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3dee' size='340' side='right'caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Neig1 Neig1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3DEE FirstGlance]. <br>		<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neig1 Neig1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_208969.1, NGO1945 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 NEIG1])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_208969.1, NGO1945 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 NEIG1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [~~http~~://pdbe.org/3dee PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3dee PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3dee ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [https://pdbe.org/3dee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [https://www.ebi.ac.uk/pdbsum/3dee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dee ProSAT], [https://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:57, 24 July 2019

2019-07-24T07:57:33Z

← Older revision		Revision as of 07:57, 24 July 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION==		==CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION==
	<StructureSection load='3dee' size='340' side='right' caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3dee' size='340' side='right'caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neig1 Neig1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DEE FirstGlance]. <br>		<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neig1 Neig1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DEE FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dee_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dee_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Neig1]]		[[Category: Neig1]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 08:47, 25 October 2017

2017-10-25T08:47:52Z

← Older revision		Revision as of 08:47, 25 October 2017
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	==CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION==		==CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION==
	<StructureSection load='3dee' size='340' side='right' caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3dee' size='340' side='right' caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_208969.1, NGO1945 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 NEIG1])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_208969.1, NGO1945 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 NEIG1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [http://pdbe.org/3dee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [http://www.ebi.ac.uk/pdbsum/3dee PDBsum], [http://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [http://pdbe.org/3dee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [http://www.ebi.ac.uk/pdbsum/3dee PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dee ProSAT], [http://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 09:41, 7 February 2016

2016-02-07T09:41:46Z

← Older revision		Revision as of 09:41, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3dee' size='340' side='right' caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3dee' size='340' side='right' caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Neisseria_gonorrhoeae_fa_1090 Neisseria gonorrhoeae fa 1090~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DEE FirstGlance]. <br>		<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neig1 Neig1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DEE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_208969.1, NGO1945 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 ~~Neisseria gonorrhoeae FA 1090~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_208969.1, NGO1945 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 NEIG1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [http://www.ebi.ac.uk/pdbsum/3dee PDBsum], [http://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [http://pdbe.org/3dee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [http://www.ebi.ac.uk/pdbsum/3dee PDBsum], [http://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dee ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 3dee" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Neisseria gonorrhoeae fa 1090~~]]		[[Category: Neig1]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]

OCA at 08:14, 12 November 2014

2014-11-12T08:14:33Z

← Older revision		Revision as of 08:14, 12 November 2014
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	[[Image:~~3dee~~.~~png~~\|~~left~~\|~~200px~~]]		==CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION==
			<StructureSection load='3dee' size='340' side='right' caption='[[3dee]], [[Resolution\|resolution]] 2.10Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[3dee]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_fa_1090 Neisseria gonorrhoeae fa 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DEE FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
			<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_208969.1, NGO1945 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 Neisseria gonorrhoeae FA 1090])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dee OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dee RCSB], [http://www.ebi.ac.uk/pdbsum/3dee PDBsum], [http://www.topsan.org/Proteins/JCSG/3dee TOPSAN]</span></td></tr>
			</table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dee_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Proteins with the DUF2063 domain constitute a new Pfam family, PF09836. The crystal structure of a member of this family, NGO1945 from Neisseria gonorrhoeae, has been determined and reveals that the N-terminal DUF2063 domain is likely to be a DNA-binding domain. In conjunction with the rest of the protein, NGO1945 is likely to be involved in transcriptional regulation, which is consistent with genomic neighborhood analysis. Of the 216 currently known proteins that contain a DUF2063 domain, the most significant sequence homologs of NGO1945 ( approximately 40-99% sequence identity) are from various Neisseria and Haemophilus species. As these are important human pathogens, NGO1945 represents an interesting candidate for further exploration via biochemical studies and possible therapeutic intervention.

	~~{{STRUCTURE_3dee\| PDB=3dee \| SCENE= }}~~		The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation.,Das D, Grishin NV, Kumar A, Carlton D, Bakolitsa C, Miller MD, Abdubek P, Astakhova T, Axelrod HL, Burra P, Chen C, Chiu HJ, Chiu M, Clayton T, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grzechnik A, Grzechnik SK, Grant JC, Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Krishna SS, Marciano D, McMullan D, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt, 10):1174-81. Epub 2009 Oct 27. PMID:20944208<ref>PMID:20944208</ref>

	~~===CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_20944208}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[3dee]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Neisseria_gonorrhoeae_fa_1090 Neisseria gonorrhoeae fa 1090]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:020944208<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Neisseria gonorrhoeae fa 1090]]		[[Category: Neisseria gonorrhoeae fa 1090]]
	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: ~~Joint center for structural genomic]]~~		[[Category: PSI, Protein structure initiative]]
	~~[[Category:~~ Protein structure initiative]]
	~~[[Category: Psi-2~~]]
	[[Category: Putative regulatory protein]]		[[Category: Putative regulatory protein]]
	~~[[Category: Structural genomic]]~~
	[[Category: Transcription]]		[[Category: Transcription]]

OCA: Protected "3dee" [edit=sysop:move=sysop]

2013-01-07T20:26:59Z

Protected "3dee" [edit=sysop:move=sysop]

← Older revision	Revision as of 20:26, 7 January 2013
(No difference)

OCA at 20:26, 7 January 2013

2013-01-07T20:26:56Z

← Older revision		Revision as of 20:26, 7 January 2013
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	~~{{Seed}}~~
	[[Image:3dee.png\|left\|200px]]		[[Image:3dee.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3dee", creates the "Structure Box" on the page.~~
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	{{STRUCTURE_3dee\| PDB=3dee \| SCENE= }}		{{STRUCTURE_3dee\| PDB=3dee \| SCENE= }}

	===CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION===		===CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_20944208}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 20944208 is the PubMed ID number.~~
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	{{ABSTRACT_PUBMED_20944208}}		{{ABSTRACT_PUBMED_20944208}}

	==About this Structure==		==About this Structure==
	~~3DEE~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_fa_1090 Neisseria gonorrhoeae fa 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA].		[[3dee]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_fa_1090 Neisseria gonorrhoeae fa 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~20944208~~</ref><references group="xtra"/>		<ref group="xtra">PMID:020944208</ref><references group="xtra"/>
	[[Category: Neisseria gonorrhoeae fa 1090]]		[[Category: Neisseria gonorrhoeae fa 1090]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Transcription]]		[[Category: Transcription]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 10 06:54:34 2010''~~

OCA at 03:43, 10 November 2010

2010-11-10T03:43:39Z

← Older revision		Revision as of 03:43, 10 November 2010
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	===CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION===		===CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION===


			<!--
			The line below this paragraph, {{ABSTRACT_PUBMED_20944208}}, adds the Publication Abstract to the page
			(as it appears on PubMed at http://www.pubmed.gov), where 20944208 is the PubMed ID number.
			-->
			{{ABSTRACT_PUBMED_20944208}}

	==About this Structure==		==About this Structure==
	3DEE is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_fa_1090 Neisseria gonorrhoeae fa 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA].		3DEE is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_fa_1090 Neisseria gonorrhoeae fa 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEE OCA].

			==Reference==
			<ref group="xtra">PMID:20944208</ref><references group="xtra"/>
	[[Category: Neisseria gonorrhoeae fa 1090]]		[[Category: Neisseria gonorrhoeae fa 1090]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
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	[[Category: Transcription]]		[[Category: Transcription]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jul 28 12~~:06:56 2010''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 10 06:54:34 2010''