3dxt - Revision history

OCA at 09:43, 21 February 2024

2024-02-21T09:43:31Z

← Older revision		Revision as of 09:43, 21 February 2024
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	<StructureSection load='3dxt' size='340' side='right'caption='[[3dxt]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3dxt' size='340' side='right'caption='[[3dxt]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3dxt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DXT FirstGlance]. <br>		<table><tr><td colspan='2'>[[3dxt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DXT FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">jmjd2d ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [https://pdbe.org/3dxt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [https://www.ebi.ac.uk/pdbsum/3dxt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxt ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [https://pdbe.org/3dxt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [https://www.ebi.ac.uk/pdbsum/3dxt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxt ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN]] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>		[https://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Human~~]]		[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Chen, Z]]		[[Category: Chen Z]]
	[[Category: Zhang, G]]		[[Category: Zhang G]]
	~~[[Category: Chromatin regulator]]~~
	~~[[Category: Dioxygenase]]~~
	~~[[Category: H3k9]]~~
	~~[[Category: Histone demethylase]]~~
	~~[[Category: Iron]]~~
	~~[[Category: Jmjc]]~~
	~~[[Category: Jmjd2d]]~~
	~~[[Category: Jumonji domain-containing protein 2d]]~~
	~~[[Category: Metal-binding]]~~
	~~[[Category: Nuclear protein]]~~
	~~[[Category: Nucleus]]~~
	~~[[Category: Oxidoreductase]]~~
	~~[[Category: Transcription]]~~
	~~[[Category: Transcription regulation~~]]

OCA at 08:10, 9 February 2022

2022-02-09T08:10:29Z

← Older revision		Revision as of 08:10, 9 February 2022
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	==Crystal structure of the catalytic core domain of JMJD2D==		==Crystal structure of the catalytic core domain of JMJD2D==
	<StructureSection load='3dxt' size='340' side='right' caption='[[3dxt]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3dxt' size='340' side='right'caption='[[3dxt]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3dxt]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3DXT FirstGlance]. <br>		<table><tr><td colspan='2'>[[3dxt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DXT FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">jmjd2d ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">jmjd2d ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [~~http~~://pdbe.org/3dxt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3dxt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxt ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [https://pdbe.org/3dxt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [https://www.ebi.ac.uk/pdbsum/3dxt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxt ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN]] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>		[[https://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN]] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	==See Also==		==See Also==
	*[[Jumonji domain-containing protein\|Jumonji domain-containing protein]]		*[[Jumonji domain-containing protein 3D structures\|Jumonji domain-containing protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Human]]		[[Category: Human]]
			[[Category: Large Structures]]
	[[Category: Chen, Z]]		[[Category: Chen, Z]]
	[[Category: Zhang, G]]		[[Category: Zhang, G]]

OCA at 09:50, 14 November 2018

2018-11-14T09:50:18Z

← Older revision		Revision as of 09:50, 14 November 2018
Line 1:		Line 1:

	==Crystal structure of the catalytic core domain of JMJD2D==		==Crystal structure of the catalytic core domain of JMJD2D==
	<StructureSection load='3dxt' size='340' side='right' caption='[[3dxt]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3dxt' size='340' side='right' caption='[[3dxt]], [[Resolution\|resolution]] 1.80Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">jmjd2d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">jmjd2d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [http://pdbe.org/3dxt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [http://www.ebi.ac.uk/pdbsum/3dxt PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [http://pdbe.org/3dxt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [http://www.ebi.ac.uk/pdbsum/3dxt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dxt ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxt_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxt_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 19:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dxt ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dxt ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

			==See Also==
			*[[Jumonji domain-containing protein\|Jumonji domain-containing protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:02, 8 February 2016

2016-02-08T10:02:29Z

← Older revision		Revision as of 10:02, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3dxt' size='340' side='right' caption='[[3dxt]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3dxt' size='340' side='right' caption='[[3dxt]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3dxt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Homo_sapiens Homo sapiens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DXT FirstGlance]. <br>		<table><tr><td colspan='2'>[[3dxt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DXT FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">jmjd2d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 ~~Homo sapiens~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">jmjd2d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [http://www.ebi.ac.uk/pdbsum/3dxt PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [http://pdbe.org/3dxt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [http://www.ebi.ac.uk/pdbsum/3dxt PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dxt ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Homo sapiens~~]]		[[Category: Human]]
	[[Category: Chen, Z]]		[[Category: Chen, Z]]
	[[Category: Zhang, G]]		[[Category: Zhang, G]]

OCA at 22:31, 24 December 2014

2014-12-24T22:31:44Z

← Older revision		Revision as of 22:31, 24 December 2014
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [http://www.ebi.ac.uk/pdbsum/3dxt PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [http://www.ebi.ac.uk/pdbsum/3dxt PDBsum]</span></td></tr>
	</table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN]] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 13:25, 19 November 2014

2014-11-19T13:25:51Z

← Older revision		Revision as of 13:25, 19 November 2014
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	~~[[Image:3dxt.png\|left\|200px]]~~		==Crystal structure of the catalytic core domain of JMJD2D==
			<StructureSection load='3dxt' size='340' side='right' caption='[[3dxt]], [[Resolution\|resolution]] 1.80Å' scene=''>
	~~{{STRUCTURE_3dxt\| PDB=3dxt \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[3dxt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DXT FirstGlance]. <br>
	===Crystal structure of the catalytic core domain of JMJD2D===		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">jmjd2d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dxt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dxt RCSB], [http://www.ebi.ac.uk/pdbsum/3dxt PDBsum]</span></td></tr>
	==~~About this Structure~~==		</table>
	[[3dxt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA].		== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/3dxt_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Chen, Z.]]		[[Category: Chen, Z]]
	[[Category: Zhang, G.]]		[[Category: Zhang, G]]
	[[Category: Chromatin regulator]]		[[Category: Chromatin regulator]]
	[[Category: Dioxygenase]]		[[Category: Dioxygenase]]

OCA: Protected "3dxt" [edit=sysop:move=sysop]

2013-01-09T08:51:44Z

Protected "3dxt" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:51, 9 January 2013
(No difference)

OCA at 08:51, 9 January 2013

2013-01-09T08:51:39Z

← Older revision		Revision as of 08:51, 9 January 2013
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	~~{{Seed}}~~		[[Image:3dxt.png\|left\|200px]]
	[[Image:3dxt.~~jpg~~\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3dxt", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3dxt\| PDB=3dxt \| SCENE= }}		{{STRUCTURE_3dxt\| PDB=3dxt \| SCENE= }}

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	==About this Structure==		==About this Structure==
	~~3DXT~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA].		[[3dxt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DXT OCA].
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Chen, Z.]]		[[Category: Chen, Z.]]
Line 30:		Line 23:
	[[Category: Nucleus]]		[[Category: Nucleus]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	~~[[Category: Polymorphism]]~~
	[[Category: Transcription]]		[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	~~[[Category: Zinc]]~~

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 7 14:08:15 2009''~~

OCA at 12:08, 7 October 2009

2009-10-07T12:08:16Z

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
+{{Seed}}
-The entry 3dxt is ON HOLD  until Paper Publication
+<!--
-Authors: Chen, Z., Zhang, G.
+===Crystal structure of the catalytic core domain of JMJD2D===
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug  6 12:31:41 2008''
+==About this Structure==

OCA: New page: '''Unreleased structure''' The entry 3dxt is ON HOLD until Paper Publication Authors: Chen, Z., Zhang, G. Description: Crystal structure of the catalytic core domain of JMJD2D ''Page ...

2008-08-06T09:31:41Z

New page: '''Unreleased structure''' The entry 3dxt is ON HOLD until Paper Publication Authors: Chen, Z., Zhang, G. Description: Crystal structure of the catalytic core domain of JMJD2D ''Page ...

New page

'''Unreleased structure'''

The entry 3dxt is ON HOLD until Paper Publication

Authors: Chen, Z., Zhang, G.

Description: Crystal structure of the catalytic core domain of JMJD2D

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 6 12:31:41 2008''