3hap - Revision history

OCA at 09:13, 30 October 2024

2024-10-30T09:13:33Z

← Older revision		Revision as of 09:13, 30 October 2024
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	<StructureSection load='3hap' size='340' side='right'caption='[[3hap]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3hap' size='340' side='right'caption='[[3hap]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HAP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HAP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>~~</td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</div></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [https://pdbe.org/3hap PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [https://www.ebi.ac.uk/pdbsum/3hap PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hap ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [https://pdbe.org/3hap PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [https://www.ebi.ac.uk/pdbsum/3hap PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hap ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.		[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hap_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hap_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bacillus halobius ruber klebahn 1919~~]]		[[Category: Halobacterium salinarum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Bowie~~, J U~~]]		[[Category: Bowie JU]]
	[[Category: Joh~~, N H~~]]		[[Category: Joh NH]]
	[[Category: Yang, D]]		[[Category: Yang D]]
	~~[[Category: Bacteriorhodopsin]]~~
	~~[[Category: Cell membrane]]~~
	~~[[Category: Chromophore]]~~
	~~[[Category: Evolutionary constraint]]~~
	~~[[Category: Helical membrane protein]]~~
	~~[[Category: Hydrogen ion transport]]~~
	~~[[Category: Integral membrane protein]]~~
	~~[[Category: Ion transport]]~~
	~~[[Category: Membrane]]~~
	~~[[Category: Membrane protein]]~~
	~~[[Category: Packing force]]~~
	~~[[Category: Photoreceptor protein]]~~
	~~[[Category: Proton transport]]~~
	~~[[Category: Pyrrolidone carboxylic acid]]~~
	~~[[Category: Receptor]]~~
	~~[[Category: Retinal protein]]~~
	~~[[Category: Sensory transduction]]~~
	~~[[Category: Transmembrane]]~~
	~~[[Category: Transport]]~~
	~~[[Category: Transport protein]]~~
	~~[[Category: Van der waal~~]]

OCA at 11:57, 13 October 2021

2021-10-13T11:57:14Z

← Older revision		Revision as of 11:57, 13 October 2021
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	==Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles==		==Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles==
	<StructureSection load='3hap' size='340' side='right' caption='[[3hap]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3hap' size='340' side='right'caption='[[3hap]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3HAP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HAP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [~~http~~://pdbe.org/3hap PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3hap PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3hap ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [https://pdbe.org/3hap PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [https://www.ebi.ac.uk/pdbsum/3hap PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hap ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.		[[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hap_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hap_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	</div>		</div>
	<div class="pdbe-citations 3hap" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3hap" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Bacteriorhodopsin 3D structures\|Bacteriorhodopsin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus halobius ruber klebahn 1919]]		[[Category: Bacillus halobius ruber klebahn 1919]]
			[[Category: Large Structures]]
	[[Category: Bowie, J U]]		[[Category: Bowie, J U]]
	[[Category: Joh, N H]]		[[Category: Joh, N H]]

OCA at 07:26, 1 November 2017

2017-11-01T07:26:58Z

← Older revision		Revision as of 07:26, 1 November 2017
Line 1:		Line 1:

	==Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles==		==Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles==
	<StructureSection load='3hap' size='340' side='right' caption='[[3hap]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3hap' size='340' side='right' caption='[[3hap]], [[Resolution\|resolution]] 1.60Å' scene=''>
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [http://pdbe.org/3hap PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [http://www.ebi.ac.uk/pdbsum/3hap PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [http://pdbe.org/3hap PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [http://www.ebi.ac.uk/pdbsum/3hap PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hap ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</div>		</div>
	<div class="pdbe-citations 3hap" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3hap" style="background-color:#fffaf0;"></div>

	~~==See Also==~~
	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 03:54, 9 February 2016

2016-02-09T03:54:14Z

← Older revision		Revision as of 03:54, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3hap' size='340' side='right' caption='[[3hap]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3hap' size='340' side='right' caption='[[3hap]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Halobacterium_salinarum Halobacterium salinarum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 ~~Halobacterium salinarum~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [http://www.ebi.ac.uk/pdbsum/3hap PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [http://pdbe.org/3hap PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [http://www.ebi.ac.uk/pdbsum/3hap PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hap ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 3hap" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Halobacterium salinarum~~]]		[[Category: Bacillus halobius ruber klebahn 1919]]
	[[Category: Bowie, J U]]		[[Category: Bowie, J U]]
	[[Category: Joh, N H]]		[[Category: Joh, N H]]

OCA at 04:14, 25 December 2014

2014-12-25T04:14:47Z

← Older revision		Revision as of 04:14, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAP FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [http://www.ebi.ac.uk/pdbsum/3hap PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [http://www.ebi.ac.uk/pdbsum/3hap PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Halobacterium salinarum]]		[[Category: Halobacterium salinarum]]
	[[Category: Bowie, J U.]]		[[Category: Bowie, J U]]
	[[Category: Joh, N H.]]		[[Category: Joh, N H]]
	[[Category: Yang, D.]]		[[Category: Yang, D]]
	[[Category: Bacteriorhodopsin]]		[[Category: Bacteriorhodopsin]]
	[[Category: Cell membrane]]		[[Category: Cell membrane]]

OCA at 12:47, 29 September 2014

2014-09-29T12:47:15Z

← Older revision		Revision as of 12:47, 29 September 2014
Line 1:		Line 1:
	[[Image:~~3hap~~.~~png~~\|~~left~~\|~~200px~~]]		==Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles==
			<StructureSection load='3hap' size='340' side='right' caption='[[3hap]], [[Resolution\|resolution]] 1.60Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAP FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hao\|3hao]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum])</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [http://www.ebi.ac.uk/pdbsum/3hap PDBsum]</span></td></tr>
			<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hap_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			A major driving force for water-soluble protein folding is the hydrophobic effect, but membrane proteins cannot make use of this stabilizing contribution in the apolar core of the bilayer. It has been proposed that membrane proteins compensate by packing more efficiently. We therefore investigated packing contributions experimentally by observing the energetic and structural consequences of cavity creating mutations in the core of a membrane protein. We observed little difference in the packing energetics of water and membrane soluble proteins. Our results imply that other mechanisms are employed to stabilize the structure of membrane proteins.

	~~{{STRUCTURE_3hap\| PDB=3hap \| SCENE= }}~~		Similar energetic contributions of packing in the core of membrane and water-soluble proteins.,Joh NH, Oberai A, Yang D, Whitelegge JP, Bowie JU J Am Chem Soc. 2009 Aug 12;131(31):10846-7. PMID:19603754<ref>PMID:19603754</ref>

	~~===Crystal structure~~ of ~~bacteriorhodopsin mutant L111A crystallized from bicelles===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_19603754}}~~

	~~==About this Structure==~~
	~~[[3hap]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Halobacterium_salinarum Halobacterium salinarum]~~. ~~Full crystallographic information is available from [http://oca.weizmann.ac.il~~/~~oca-bin/ocashort?id=3HAP OCA].~~

	==See Also==		==See Also==
	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]		*[[Bacteriorhodopsin\|Bacteriorhodopsin]]
			== References ==
	==~~Reference~~==		<references/>
	<~~ref group="xtra">PMID:019603754<~~/~~ref~~><~~references group="xtra"~~/>		__TOC__
			</StructureSection>
	[[Category: Halobacterium salinarum]]		[[Category: Halobacterium salinarum]]
	[[Category: Bowie, J U.]]		[[Category: Bowie, J U.]]

OCA at 12:33, 20 October 2012

2012-10-20T12:33:33Z

← Older revision		Revision as of 12:33, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
	[[3hap]] is a 1 chain structure ~~of [[Bacteriorhodopsin]]~~ with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA].		[[3hap]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA].

	==See Also==		==See Also==

OCA: Protected "3hap" [edit=sysop:move=sysop]

2012-07-26T09:06:56Z

Protected "3hap" [edit=sysop:move=sysop]

← Older revision	Revision as of 09:06, 26 July 2012
(No difference)

OCA at 09:06, 26 July 2012

2012-07-26T09:06:53Z

← Older revision		Revision as of 09:06, 26 July 2012
Line 1:		Line 1:
	~~{{Seed}}~~		[[Image:3hap.png\|left\|200px]]
	[[Image:3hap.~~jpg~~\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3hap", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3hap\| PDB=3hap \| SCENE= }}		{{STRUCTURE_3hap\| PDB=3hap \| SCENE= }}

	===Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles===		===Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_19603754}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 19603754 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_19603754}}		{{ABSTRACT_PUBMED_19603754}}

	==About this Structure==		==About this Structure==
	~~3HAP~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA].		[[3hap]] is a 1 chain structure of [[Bacteriorhodopsin]] with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA].

			==See Also==
			*[[Bacteriorhodopsin\|Bacteriorhodopsin]]

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~19603754~~</ref><references group="xtra"/>		<ref group="xtra">PMID:019603754</ref><references group="xtra"/>
	[[Category: Halobacterium salinarum]]		[[Category: Halobacterium salinarum]]
	[[Category: Bowie, J U.]]		[[Category: Bowie, J U.]]
Line 49:		Line 40:
	[[Category: Transport protein]]		[[Category: Transport protein]]
	[[Category: Van der waal]]		[[Category: Van der waal]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 23 08:45:05 2009''~~

OCA at 05:45, 23 September 2009

2009-09-23T05:45:07Z

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
+{{Seed}}
-The entry 3hap is ON HOLD  until Paper Publication
+<!--
-Authors: Joh, N.H., Yang, D., Bowie, J.U.
+===Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles===
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 13 09:37:03 2009''
+<!--