3idd - Revision history

OCA at 01:56, 21 November 2024

2024-11-21T01:56:43Z

← Older revision		Revision as of 01:56, 21 November 2024
Line 3:		Line 3:
	<StructureSection load='3idd' size='340' side='right'caption='[[3idd]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3idd' size='340' side='right'caption='[[3idd]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"thermoplasma_acidophila"_(sic)_darland_et_al._1970 "thermoplasma acidophila" (sic) darland et al. 1970~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IDD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IDD FirstGlance]. <br>
	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>apgM, Ta0413 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~2303~~ "~~Thermoplasma acidophila~~" ~~(sic) Darland et al. 1970])</td~~><~~/tr>~~		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1]~~ </~~span~~></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [https://pdbe.org/3idd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [https://www.ebi.ac.uk/pdbsum/3idd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3idd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [https://pdbe.org/3idd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [https://www.ebi.ac.uk/pdbsum/3idd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3idd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/APGM_THEAC APGM_THEAC]] Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).		[https://www.uniprot.org/uniprot/APGM_THEAC APGM_THEAC] Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 15:
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/3idd_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/3idd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
Line 27:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Phosphoglycerate mutase~~]]		[[Category: Thermoplasma acidophilum]]
	[[Category: Buck, K]]		[[Category: Buck K]]
	[[Category: Duke~~, N E.C~~]]		[[Category: Duke NEC]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak A]]
	~~[[Category: Structural genomic~~]]		[[Category: Marshall N]]
	[[Category: Marshall, N]]
	~~[[Category: Glycolysis]]~~
	~~[[Category: Isomerase]]~~
	~~[[Category: Mcsg]]~~
	~~[[Category: PSI, Protein structure initiative~~]]

OCA at 03:29, 21 April 2022

2022-04-21T03:29:50Z

← Older revision		Revision as of 03:29, 21 April 2022
Line 1:		Line 1:

	==Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728==		==Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728==
	<StructureSection load='3idd' size='340' side='right' caption='[[3idd]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3idd' size='340' side='right'caption='[[3idd]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"thermoplasma_acidophila"_(sic)_darland_et_al._1970 "thermoplasma acidophila" (sic) darland et al. 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3IDD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"thermoplasma_acidophila"_(sic)_darland_et_al._1970 "thermoplasma acidophila" (sic) darland et al. 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IDD FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [~~http~~://pdbe.org/3idd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3idd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3idd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [https://pdbe.org/3idd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [https://www.ebi.ac.uk/pdbsum/3idd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3idd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/APGM_THEAC APGM_THEAC]] Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).		[[https://www.uniprot.org/uniprot/APGM_THEAC APGM_THEAC]] Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:

	==See Also==		==See Also==
	*[[Phosphoglycerate ~~Mutase~~\|Phosphoglycerate ~~Mutase~~]]		*[[Phosphoglycerate mutase 3D structures\|Phosphoglycerate mutase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Phosphoglycerate mutase]]		[[Category: Phosphoglycerate mutase]]
	[[Category: Buck, K]]		[[Category: Buck, K]]

OCA at 09:43, 19 December 2018

2018-12-19T09:43:53Z

← Older revision		Revision as of 09:43, 19 December 2018
Line 1:		Line 1:

	==Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728==		==Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728==
	<StructureSection load='3idd' size='340' side='right' caption='[[3idd]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3idd' size='340' side='right' caption='[[3idd]], [[Resolution\|resolution]] 2.80Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [http://pdbe.org/3idd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [http://www.ebi.ac.uk/pdbsum/3idd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [http://pdbe.org/3idd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [http://www.ebi.ac.uk/pdbsum/3idd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3idd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/3idd_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/3idd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 13:09, 7 February 2016

2016-02-07T13:09:32Z

← Older revision		Revision as of 13:09, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3idd' size='340' side='right' caption='[[3idd]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3idd' size='340' side='right' caption='[[3idd]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermoplasma_acidophilum Thermoplasma acidophilum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IDD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"thermoplasma_acidophila"_(sic)_darland_et_al._1970 "thermoplasma acidophila" (sic) darland et al. 1970]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IDD FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 Thermoplasma ~~acidophilum~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 "Thermoplasma acidophila" (sic) Darland et al. 1970])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [http://www.ebi.ac.uk/pdbsum/3idd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [http://pdbe.org/3idd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [http://www.ebi.ac.uk/pdbsum/3idd PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3idd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 26:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Phosphoglycerate mutase]]		[[Category: Phosphoglycerate mutase]]
	~~[[Category: Thermoplasma acidophilum]]~~
	[[Category: Buck, K]]		[[Category: Buck, K]]
	[[Category: Duke, N E.C]]		[[Category: Duke, N E.C]]

OCA at 15:18, 24 December 2014

2014-12-24T15:18:57Z

← Older revision		Revision as of 15:18, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IDD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IDD FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 Thermoplasma acidophilum])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 Thermoplasma acidophilum])</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [http://www.ebi.ac.uk/pdbsum/3idd PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [http://www.ebi.ac.uk/pdbsum/3idd PDBsum]</span></td></tr>
	<table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/APGM_THEAC APGM_THEAC]] Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 27:
	[[Category: Phosphoglycerate mutase]]		[[Category: Phosphoglycerate mutase]]
	[[Category: Thermoplasma acidophilum]]		[[Category: Thermoplasma acidophilum]]
	[[Category: Buck, K.]]		[[Category: Buck, K]]
	[[Category: Duke, N E.C.]]		[[Category: Duke, N E.C]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A]]
	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]		[[Category: Structural genomic]]
	[[Category: Marshall, N.]]		[[Category: Marshall, N]]
	[[Category: Glycolysis]]		[[Category: Glycolysis]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
	[[Category: ~~Midwest center for structural genomic]]~~		[[Category: PSI, Protein structure initiative]]
	~~[[Category: Phosphoglycerate mutase]]~~
	~~[[Category:~~ Protein structure initiative]]
	~~[[Category: Psi-2]]~~
	~~[[Category: Structural genomic~~]]

OCA at 13:10, 29 September 2014

2014-09-29T13:10:30Z

← Older revision		Revision as of 13:10, 29 September 2014
Line 1:		Line 1:
	~~[[Image:3idd.png\|left\|200px]]~~		==Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728==
			<StructureSection load='3idd' size='340' side='right' caption='[[3idd]], [[Resolution\|resolution]] 2.80Å' scene=''>
	~~{{STRUCTURE_3idd\| PDB=3idd \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[3idd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IDD FirstGlance]. <br>
	===Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728===		</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">apgM, Ta0413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2303 Thermoplasma acidophilum])</td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_mutase Phosphoglycerate mutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.1 5.4.2.1] </span></td></tr>
	==~~About this Structure~~==		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3idd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3idd RCSB], [http://www.ebi.ac.uk/pdbsum/3idd PDBsum]</span></td></tr>
	[[3idd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA].		<table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/3idd_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Phosphoglycerate Mutase\|Phosphoglycerate Mutase]]		*[[Phosphoglycerate Mutase\|Phosphoglycerate Mutase]]
			__TOC__
			</StructureSection>
	[[Category: Phosphoglycerate mutase]]		[[Category: Phosphoglycerate mutase]]
	[[Category: Thermoplasma acidophilum]]		[[Category: Thermoplasma acidophilum]]

OCA at 06:44, 20 October 2012

2012-10-20T06:44:35Z

← Older revision		Revision as of 06:44, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
	[[3idd]] is a 2 chain structure ~~of [[Phosphoglycerate Mutase]]~~ with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA].		[[3idd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA].

	==See Also==		==See Also==

OCA: Protected "3idd" [edit=sysop:move=sysop]

2012-07-25T14:09:26Z

Protected "3idd" [edit=sysop:move=sysop]

← Older revision	Revision as of 14:09, 25 July 2012
(No difference)

OCA at 14:09, 25 July 2012

2012-07-25T14:09:23Z

← Older revision		Revision as of 14:09, 25 July 2012
Line 1:		Line 1:
	~~{{Seed}}~~		[[Image:3idd.png\|left\|200px]]
	[[Image:3idd.~~jpg~~\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3idd", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3idd\| PDB=3idd \| SCENE= }}		{{STRUCTURE_3idd\| PDB=3idd \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
	~~3IDD~~ is a 2 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA].		[[3idd]] is a 2 chain structure of [[Phosphoglycerate Mutase]] with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IDD OCA].

			==See Also==
			*[[Phosphoglycerate Mutase\|Phosphoglycerate Mutase]]
	[[Category: Phosphoglycerate mutase]]		[[Category: Phosphoglycerate mutase]]
	[[Category: Thermoplasma acidophilum]]		[[Category: Thermoplasma acidophilum]]
Line 30:		Line 26:
	[[Category: Psi-2]]		[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 7 14:12:45 2009''~~

OCA at 12:12, 7 October 2009

2009-10-07T12:12:46Z

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
+{{Seed}}
-The entry 3idd is ON HOLD
+<!--
-Authors: Joachimiak, A., Duke, N.E.C., Marshall, N., Buck, K., Midwest Center for Structural Genomics (MCSG)
+===Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728===
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug  5 09:50:41 2009''
+==About this Structure==