3ize - Revision history

OCA: Redirecting to 4v6i

2014-12-10T15:24:21Z

Redirecting to 4v6i

← Older revision		Revision as of 15:24, 10 December 2014
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	~~==Model of the small subunit RNA based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome==~~		#REDIRECT [[4v6i]] This PDB entry is obsolete and replaced by 4v6i
	~~<StructureSection load='3ize' size='340' side='right' caption='~~[[~~3ize~~]]~~, [[Resolution\|resolution]] 8.80Å' scene=''>~~
	~~== Structural highlights ==~~
	~~<table><tr><td colspan='2'>[[3ize]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information~~ is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IZE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IZE FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3iz5\|3iz5]], [[3iz6\|3iz6]], [[3iz7\|3iz7]], [[3iz9\|3iz9]], [[3izb\|3izb]], [[3izs\|3izs]], [[3izd\|3izd]], [[3izf\|3izf]]</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ize FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ize OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ize RCSB], [http://www.ebi.ac.uk/pdbsum/3ize PDBsum]</span></td></tr>
	~~<table>~~
	~~<div style="background-color:#fffaf0;">~~
	~~== Publication Abstract from PubMed ==~~
	Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosomes are lacking. Using cryoelectron microscopy and single-particle reconstruction, we have determined the structure of a translating plant (Triticum aestivum) 80S ribosome at 5.5-A resolution. This map, together with a 6.1-A map of a Saccharomyces cerevisiae 80S ribosome, has enabled us to model approximately 98% of the rRNA. Accurate assignment of the rRNA expansion segments (ES) and variable regions has revealed unique ES-ES and r-protein-ES interactions, providing insight into the structure and evolution of the eukaryotic ribosome.

	~~Cryo-EM structure~~ and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.,Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soding J, Westhof E, Wilson DN, Beckmann R Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19748-53. Epub 2010 Oct 27. PMID:20980660<ref>PMID:20980660</ref>

	~~From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>~~
	~~</div>~~
	~~== References ==~~
	~~<references/>~~
	~~__TOC__~~
	~~</StructureSection>~~
	~~[[Category: Saccharomyces cerevisiae]]~~
	~~[[Category: Anger, A M.]]~~
	~~[[Category: Armache, J P.]]~~
	~~[[Category: Beatrix, B.]]~~
	~~[[Category: Becker, T.]]~~
	~~[[Category: Beckmann, R.]]~~
	~~[[Category: Berninghausen, O.]]~~
	~~[[Category: Bhushan, S.]]~~
	~~[[Category: Dindar, G.]]~~
	~~[[Category: Franckenberg, S.]]~~
	~~[[Category: Habeck, M.]]~~
	~~[[Category: Jarasch, A.]]~~
	~~[[Category: Jossinet, F.]]~~
	~~[[Category: Marquez, V.]]~~
	~~[[Category: Mielke, T.]]~~
	~~[[Category: Soeding, J.]]~~
	~~[[Category: Thomm, M.]]~~
	~~[[Category: Villa, E.]]~~
	~~[[Category: Westhof, E.]]~~
	~~[[Category: Wilson, D N.]]~~
	~~[[Category: De novo modeling]]~~
	~~[[Category: Eukaryotic ribosome]]~~
	~~[[Category: Homology modeling]]~~
	~~[[Category: Ribosomal rna]]~~
	~~[[Category: Ribosome]]~~
	~~[[Category: Rna expansion segment]]~~
	~~[[Category: Rrna]]~~

OCA at 09:48, 21 May 2014

2014-05-21T09:48:41Z

← Older revision		Revision as of 09:48, 21 May 2014
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	[[~~Image~~:~~3ize~~.~~png~~\|~~left~~\|~~200px~~]]		==Model of the small subunit RNA based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome==
			<StructureSection load='3ize' size='340' side='right' caption='[[3ize]], [[Resolution\|resolution]] 8.80Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[3ize]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IZE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IZE FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3iz5\|3iz5]], [[3iz6\|3iz6]], [[3iz7\|3iz7]], [[3iz9\|3iz9]], [[3izb\|3izb]], [[3izs\|3izs]], [[3izd\|3izd]], [[3izf\|3izf]]</td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ize FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ize OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ize RCSB], [http://www.ebi.ac.uk/pdbsum/3ize PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosomes are lacking. Using cryoelectron microscopy and single-particle reconstruction, we have determined the structure of a translating plant (Triticum aestivum) 80S ribosome at 5.5-A resolution. This map, together with a 6.1-A map of a Saccharomyces cerevisiae 80S ribosome, has enabled us to model approximately 98% of the rRNA. Accurate assignment of the rRNA expansion segments (ES) and variable regions has revealed unique ES-ES and r-protein-ES interactions, providing insight into the structure and evolution of the eukaryotic ribosome.

	<!--		Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.,Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soding J, Westhof E, Wilson DN, Beckmann R Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19748-53. Epub 2010 Oct 27. PMID:20980660<ref>PMID:20980660</ref>
	~~The line below this paragraph~~, ~~containing "STRUCTURE_3ize"~~, ~~creates the "Structure Box" on the page~~.
	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display~~.
	-->
	~~{{STRUCTURE_3ize\| PDB=3ize \| SCENE= }}~~

	~~===Model of the small subunit RNA based on~~ a ~~6.1 A cryo-EM map~~ of ~~Saccharomyces cerevisiae translating 80S ribosome===~~		From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
			</div>
			== References ==
	~~<!--~~		<references/>
	~~The line below this paragraph, {{ABSTRACT_PUBMED_20980660}}, adds~~ the ~~Publication Abstract to the page~~		__TOC__
	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 20980660 is the PubMed ID number~~.		</StructureSection>
	-->
	~~{{ABSTRACT_PUBMED_20980660}}~~

	~~==About this Structure==~~
	~~[[3ize]] is a 3 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IZE OCA].~~

	==~~Reference~~==
	<~~ref group="xtra">PMID:020980660<~~/~~ref><ref group="xtra">PMID:020974910</ref~~><~~references group="xtra"~~/>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: Anger, A M.]]		[[Category: Anger, A M.]]

OCA at 04:54, 30 May 2012

2012-05-30T04:54:56Z

← Older revision		Revision as of 04:54, 30 May 2012
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	==Reference==		==Reference==
	<ref group="xtra">PMID:~~20980660~~</ref><ref group="xtra">PMID:~~20974910~~</ref><references group="xtra"/>		<ref group="xtra">PMID:020980660</ref><ref group="xtra">PMID:020974910</ref><references group="xtra"/>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: Anger, A M.]]		[[Category: Anger, A M.]]

OCA: Protected "3ize" [edit=sysop:move=sysop]

2011-03-14T18:23:23Z

Protected "3ize" [edit=sysop:move=sysop]

← Older revision	Revision as of 18:23, 14 March 2011
(No difference)

OCA at 18:23, 14 March 2011

2011-03-14T18:23:21Z

← Older revision		Revision as of 18:23, 14 March 2011
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	~~{{Seed}}~~		[[Image:3ize.png\|left\|200px]]
	[[Image:3ize.~~jpg~~\|left\|200px]]

	<!--		<!--
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	==About this Structure==		==About this Structure==
	~~3IZE~~ is a 3 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IZE OCA].		[[3ize]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IZE OCA].

	==Reference==		==Reference==
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	[[Category: Rna expansion segment]]		[[Category: Rna expansion segment]]
	[[Category: Rrna]]		[[Category: Rrna]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 1 11:29:57 2010''~~

OCA at 08:18, 1 December 2010

2010-12-01T08:18:10Z

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
+{{Seed}}
-The entry 3ize is ON HOLD
+<!--
-Authors: Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
+===Model of the small subunit RNA based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome===
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 10 06:26:21 2010''
+<!--

OCA at 03:15, 10 November 2010

2010-11-10T03:15:25Z

← Older revision		Revision as of 03:15, 10 November 2010
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	Authors: Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.		Authors: Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.

	Description: Model of the small subunit RNA based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome ~~(with ES27L-in)~~		Description: Model of the small subunit RNA based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Oct 20~~ 06:16:24 2010''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 10 06:26:21 2010''

OCA: New page: '''Unreleased structure''' The entry 3ize is ON HOLD Authors: Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Francke...

2010-10-20T03:06:19Z

New page: '''Unreleased structure''' The entry 3ize is ON HOLD Authors: Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Francke...

New page

'''Unreleased structure'''

The entry 3ize is ON HOLD

Authors: Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.

Description: Model of the small subunit RNA based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome (with ES27L-in)

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 20 06:16:24 2010''