3jay - Revision history

OCA at 08:42, 7 February 2024

2024-02-07T08:42:32Z

← Older revision		Revision as of 08:42, 7 February 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3jay]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JAY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JAY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3jay]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JAY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JAY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3Å</td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3jaz\|3jaz]], [[3jb0\|3jb0]], [[3jb1\|3jb1]], [[3jb2\|3jb2]], [[3jb3\|3jb3]]</div></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jay OCA], [https://pdbe.org/3jay PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jay RCSB], [https://www.ebi.ac.uk/pdbsum/3jay PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jay ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jay OCA], [https://pdbe.org/3jay PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jay RCSB], [https://www.ebi.ac.uk/pdbsum/3jay PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jay ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/~~CAPSD_CPVBM CAPSD_CPVBM~~]~~] Capsid protein self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 50 nm in diameter, and consisting of 120 capsid proteins. The capsid encapsulates the genomic RNA.~~		[https://www.uniprot.org/uniprot/Q914N6_CPVBM Q914N6_CPVBM]
	~~<div style="background-color:#fffaf0;">~~
	~~== Publication Abstract from PubMed ==~~
	mRNA transcription in dsRNA viruses is a highly regulated process but the mechanism of this regulation is not known. Here, by nucleoside triphosphatase (NTPase) assay and comparisons of six high-resolution (2.9-3.1 A) cryo-electron microscopy structures of cytoplasmic polyhedrosis virus with bound ligands, we show that the large sub-domain of the guanylyltransferase (GTase) domain of the turret protein (TP) also has an ATP-binding site and is likely an ATPase. S-adenosyl-L-methionine (SAM) acts as a signal and binds the methylase-2 domain of TP to induce conformational change of the viral capsid, which in turn activates the putative ATPase. ATP binding/hydrolysis leads to an enlarged capsid for efficient mRNA synthesis, an open GTase domain for His217-mediated guanylyl transfer, and an open methylase-1 domain for SAM binding and methyl transfer. Taken together, our data support a role of the putative ATPase in mediating the activation of mRNA transcription and capping within the confines of the virus.

	~~A putative ATPase mediates RNA transcription and capping in a dsRNA virus.,Yu X, Jiang J, Sun J, Zhou ZH Elife. 2015 Aug 4;4:e07901. doi: 10.7554/eLife.07901. PMID:26240998<ref>PMID:26240998</ref>~~

	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~
	~~</div>~~
	~~<div class="pdbe-citations 3jay" style="background-color:#fffaf0;"></div>~~

	==See Also==		==See Also==
	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]		*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</SX>		</SX>
	[[Category: Bombyx mori cypovirus 1]]		[[Category: Bombyx mori cypovirus 1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Jiang~~, J S~~]]		[[Category: Jiang JS]]
	[[Category: Sun~~, J C~~]]		[[Category: Sun JC]]
	[[Category: Yu~~, X K~~]]		[[Category: Yu XK]]
	[[Category: Zhou~~, Z H]]~~		[[Category: Zhou ZH]]
	~~[[Category: Conformational change]]~~
	~~[[Category: Histidine-mediated guanylyl transfer]]~~
	~~[[Category: Regulation of transcription]]~~
	~~[[Category: Viral atpase]]~~
	~~[[Category: Virus~~]]

OCA at 13:30, 4 May 2022

2022-05-04T13:30:30Z

← Older revision		Revision as of 13:30, 4 May 2022
Line 3:		Line 3:
	<SX load='3jay' size='340' side='right' viewer='molstar' caption='[[3jay]], [[Resolution\|resolution]] 3.00Å' scene=''>		<SX load='3jay' size='340' side='right' viewer='molstar' caption='[[3jay]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3jay]] is a 5 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JAY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3JAY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3jay]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JAY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JAY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3jaz\|3jaz]], [[3jb0\|3jb0]], [[3jb1\|3jb1]], [[3jb2\|3jb2]], [[3jb3\|3jb3]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3jaz\|3jaz]], [[3jb0\|3jb0]], [[3jb1\|3jb1]], [[3jb2\|3jb2]], [[3jb3\|3jb3]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3jay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jay OCA], [~~http~~://pdbe.org/3jay PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3jay RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3jay PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3jay ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jay OCA], [https://pdbe.org/3jay PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jay RCSB], [https://www.ebi.ac.uk/pdbsum/3jay PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jay ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/CAPSD_CPVBM CAPSD_CPVBM]] Capsid protein self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 50 nm in diameter, and consisting of 120 capsid proteins. The capsid encapsulates the genomic RNA.		[[https://www.uniprot.org/uniprot/CAPSD_CPVBM CAPSD_CPVBM]] Capsid protein self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 50 nm in diameter, and consisting of 120 capsid proteins. The capsid encapsulates the genomic RNA.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 3jay" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3jay" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 18:23, 10 April 2020

2020-04-10T18:23:22Z

← Older revision		Revision as of 18:23, 10 April 2020
Line 3:		Line 3:
	<SX load='3jay' size='340' side='right' viewer='molstar' caption='[[3jay]], [[Resolution\|resolution]] 3.00Å' scene=''>		<SX load='3jay' size='340' side='right' viewer='molstar' caption='[[3jay]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3jay]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JAY OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3JAY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3jay]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JAY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3JAY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3jaz\|3jaz]], [[3jb0\|3jb0]], [[3jb1\|3jb1]], [[3jb2\|3jb2]], [[3jb3\|3jb3]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3jaz\|3jaz]], [[3jb0\|3jb0]], [[3jb1\|3jb1]], [[3jb2\|3jb2]], [[3jb3\|3jb3]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3jay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jay OCA], [http://pdbe.org/3jay PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jay RCSB], [http://www.ebi.ac.uk/pdbsum/3jay PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jay ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3jay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jay OCA], [http://pdbe.org/3jay PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jay RCSB], [http://www.ebi.ac.uk/pdbsum/3jay PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jay ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 04:28, 5 March 2020

2020-03-05T04:28:51Z

← Older revision		Revision as of 04:28, 5 March 2020
Line 1:		Line 1:

	==Atomic model of transcribing cytoplasmic polyhedrosis virus==		==Atomic model of transcribing cytoplasmic polyhedrosis virus==
	<~~StructureSection~~ load='3jay' size='340' side='right' caption='[[3jay]], [[Resolution\|resolution]] 3.00Å' scene=''>		<SX load='3jay' size='340' side='right' viewer='molstar' caption='[[3jay]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3jay]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JAY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JAY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3jay]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JAY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JAY FirstGlance]. <br>
Line 22:		Line 22:
	<references/>		<references/>
	__TOC__		__TOC__
	</~~StructureSection~~>		</SX>
	[[Category: Bombyx mori cypovirus 1]]		[[Category: Bombyx mori cypovirus 1]]
			[[Category: Large Structures]]
	[[Category: Jiang, J S]]		[[Category: Jiang, J S]]
	[[Category: Sun, J C]]		[[Category: Sun, J C]]

OCA at 11:01, 2 November 2016

2016-11-02T11:01:45Z

← Older revision		Revision as of 11:01, 2 November 2016
Line 1:		Line 1:

	==Atomic model of transcribing cytoplasmic polyhedrosis virus==		==Atomic model of transcribing cytoplasmic polyhedrosis virus==
	<StructureSection load='3jay' size='340' side='right' caption='[[3jay]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='3jay' size='340' side='right' caption='[[3jay]], [[Resolution\|resolution]] 3.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3jaz\|3jaz]], [[3jb0\|3jb0]], [[3jb1\|3jb1]], [[3jb2\|3jb2]], [[3jb3\|3jb3]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3jaz\|3jaz]], [[3jb0\|3jb0]], [[3jb1\|3jb1]], [[3jb2\|3jb2]], [[3jb3\|3jb3]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jay OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3jay RCSB], [http://www.ebi.ac.uk/pdbsum/3jay PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jay OCA], [http://pdbe.org/3jay PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jay RCSB], [http://www.ebi.ac.uk/pdbsum/3jay PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jay ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/CAPSD_CPVBM CAPSD_CPVBM]] Capsid protein self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 50 nm in diameter, and consisting of 120 capsid proteins. The capsid encapsulates the genomic RNA.		[[http://www.uniprot.org/uniprot/CAPSD_CPVBM CAPSD_CPVBM]] Capsid protein self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 50 nm in diameter, and consisting of 120 capsid proteins. The capsid encapsulates the genomic RNA.
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			mRNA transcription in dsRNA viruses is a highly regulated process but the mechanism of this regulation is not known. Here, by nucleoside triphosphatase (NTPase) assay and comparisons of six high-resolution (2.9-3.1 A) cryo-electron microscopy structures of cytoplasmic polyhedrosis virus with bound ligands, we show that the large sub-domain of the guanylyltransferase (GTase) domain of the turret protein (TP) also has an ATP-binding site and is likely an ATPase. S-adenosyl-L-methionine (SAM) acts as a signal and binds the methylase-2 domain of TP to induce conformational change of the viral capsid, which in turn activates the putative ATPase. ATP binding/hydrolysis leads to an enlarged capsid for efficient mRNA synthesis, an open GTase domain for His217-mediated guanylyl transfer, and an open methylase-1 domain for SAM binding and methyl transfer. Taken together, our data support a role of the putative ATPase in mediating the activation of mRNA transcription and capping within the confines of the virus.

			A putative ATPase mediates RNA transcription and capping in a dsRNA virus.,Yu X, Jiang J, Sun J, Zhou ZH Elife. 2015 Aug 4;4:e07901. doi: 10.7554/eLife.07901. PMID:26240998<ref>PMID:26240998</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 3jay" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 14:43, 12 August 2015

2015-08-12T14:43:07Z

← Older revision		Revision as of 14:43, 12 August 2015
Line 1:		Line 1:
	'''~~Unreleased structure~~'''		==Atomic model of transcribing cytoplasmic polyhedrosis virus==
			<StructureSection load='3jay' size='340' side='right' caption='[[3jay]], [[Resolution\|resolution]] 3.00Å' scene=''>
	~~The entry~~ 3jay is ~~ON HOLD until Paper Publication~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[3jay]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JAY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JAY FirstGlance]. <br>
	~~Authors~~: Yu, X.K., ~~Jiang~~, J.S., ~~Sun, J~~.C., ~~Zhou~~, Z.H.		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
			<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3jaz\|3jaz]], [[3jb0\|3jb0]], [[3jb1\|3jb1]], [[3jb2\|3jb2]], [[3jb3\|3jb3]]</td></tr>
	~~Description: Atomic model of transcribing cytoplasmic polyhedrosis virus~~		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jay OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3jay RCSB], [http://www.ebi.ac.uk/pdbsum/3jay PDBsum]</span></td></tr>
	[[Category: ~~Unreleased Structures~~]]		</table>
	[[Category: ~~Zhou~~, ~~Z.H~~]]		== Function ==
	[[Category: Sun, J.C]]		[[http://www.uniprot.org/uniprot/CAPSD_CPVBM CAPSD_CPVBM]] Capsid protein self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 50 nm in diameter, and consisting of 120 capsid proteins. The capsid encapsulates the genomic RNA.
	[[Category: ~~Jiang~~, ~~J.S~~]]		__TOC__
	[[Category: Yu, ~~X.K~~]]		</StructureSection>
			[[Category: Bombyx mori cypovirus 1]]
			[[Category: Jiang, J S]]
			[[Category: Sun, J C]]
			[[Category: Yu, X K]]
			[[Category: Zhou, Z H]]
			[[Category: Conformational change]]
			[[Category: Histidine-mediated guanylyl transfer]]
			[[Category: Regulation of transcription]]
			[[Category: Viral atpase]]
			[[Category: Virus]]

OCA at 14:15, 5 August 2015

2015-08-05T14:15:41Z

← Older revision		Revision as of 14:15, 5 August 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 3jay is ON HOLD		The entry 3jay is ON HOLD until Paper Publication

	Authors: Yu, X.K., Jiang, J.S., Sun, J.C., Zhou, Z.H.		Authors: Yu, X.K., Jiang, J.S., Sun, J.C., Zhou, Z.H.

	Description: ~~A putative ATPase mediates RNA transcription and capping in a dsRNA~~ virus		Description: Atomic model of transcribing cytoplasmic polyhedrosis virus
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Zhou, Z.H]]		[[Category: Zhou, Z.H]]

OCA at 08:51, 22 July 2015

2015-07-22T08:51:03Z

← Older revision		Revision as of 08:51, 22 July 2015
Line 3:		Line 3:
	The entry 3jay is ON HOLD		The entry 3jay is ON HOLD

	Authors: Yu XK, Jiang JS, ~~SUN JC~~, Zhou ZH		Authors: Yu, X.K., Jiang, J.S., Sun, J.C., Zhou, Z.H.

	Description: A putative ATPase mediates RNA transcription and capping in a dsRNA virus		Description: A putative ATPase mediates RNA transcription and capping in a dsRNA virus
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: ~~Yu Xk~~, Jiang Js, ~~Sun Jc~~, ~~Zhou Zh~~]]		[[Category: Zhou, Z.H]]
			[[Category: Sun, J.C]]
			[[Category: Jiang, J.S]]
			[[Category: Yu, X.K]]

OCA: Protected "3jay" [edit=sysop:move=sysop]

2015-07-15T08:14:35Z

Protected "3jay" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:14, 15 July 2015
(No difference)

OCA: New page: '''Unreleased structure''' The entry 3jay is ON HOLD Authors: Yu XK, Jiang JS, SUN JC, Zhou ZH Description: A putative ATPase mediates RNA transcription and capping in a dsRNA virus [[...

2015-07-15T08:14:34Z

New page: '''Unreleased structure''' The entry 3jay is ON HOLD Authors: Yu XK, Jiang JS, SUN JC, Zhou ZH Description: A putative ATPase mediates RNA transcription and capping in a dsRNA virus [[...

New page

'''Unreleased structure'''

The entry 3jay is ON HOLD

Authors: Yu XK, Jiang JS, SUN JC, Zhou ZH

Description: A putative ATPase mediates RNA transcription and capping in a dsRNA virus
[[Category: Unreleased Structures]]
[[Category: Yu Xk, Jiang Js, Sun Jc, Zhou Zh]]