3n4e - Revision history

OCA at 10:12, 6 November 2024

2024-11-06T10:12:50Z

← Older revision		Revision as of 10:12, 6 November 2024
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	==CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222==		==CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222==
	<StructureSection load='3n4e' size='340' side='right' caption='[[3n4e]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3n4e' size='340' side='right'caption='[[3n4e]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3n4e]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Pardp Pardp~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4E OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3N4E FirstGlance]. <br>		<table><tr><td colspan='2'>[[3n4e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans_PD1222 Paracoccus denitrificans PD1222]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N4E FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CA:CALCIUM+ION'>CA</scene~~>, ~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td~~></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></~~td><td class="sblockDat"~~>~~69934097, Pden_0244 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318586 PARDP])~~</td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4e OCA], [https://pdbe.org/3n4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n4e RCSB], [https://www.ebi.ac.uk/pdbsum/3n4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n4e ProSAT]</span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3n4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4e OCA], [~~http~~://pdbe.org/3n4e PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3n4e RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3n4e PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3n4e ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/A1AYL4_PARDP A1AYL4_PARDP]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n4/3n4e_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n4/3n4e_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4e ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4e ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

			==See Also==
			*[[Mandelate racemase\|Mandelate racemase]]
			*[[Mandelate racemase/muconate lactonizing enzyme 3D structures\|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Pardp~~]]		[[Category: Large Structures]]
	[[Category: ~~Almo, S C~~]]		[[Category: Paracoccus denitrificans PD1222]]
	[[Category: ~~Burley, S K~~]]		[[Category: Almo SC]]
	[[Category: ~~Malashkevich, V N~~]]		[[Category: Burley SK]]
	[[Category: ~~Structural genomic~~]]		[[Category: Malashkevich VN]]
	[[Category: Sauder~~, J M~~]]		[[Category: Sauder JM]]
	[[Category: Toro, R]]		[[Category: Toro R]]
	~~[[Category: Enolase]]~~
	~~[[Category: Isomerase]]~~
	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~
	~~[[Category: PSI, Protein structure initiative~~]]

OCA at 08:23, 8 November 2017

2017-11-08T08:23:09Z

← Older revision		Revision as of 08:23, 8 November 2017
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4e ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4e ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

	~~==See Also==~~
	*[[Mandelate racemase\|Mandelate racemase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
Line 31:		Line 28:
	[[Category: Sauder, J M]]		[[Category: Sauder, J M]]
	[[Category: Toro, R]]		[[Category: Toro, R]]
	~~[[Category: Crystal structure]]~~
	[[Category: Enolase]]		[[Category: Enolase]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]		[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]

OCA at 08:43, 11 August 2016

2016-08-11T08:43:26Z

← Older revision		Revision as of 08:43, 11 August 2016
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222==		==CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222==
	<StructureSection load='3n4e' size='340' side='right' caption='[[3n4e]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3n4e' size='340' side='right' caption='[[3n4e]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3n4e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Paracoccus_denitrificans Paracoccus denitrificans~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N4E FirstGlance]. <br>		<table><tr><td colspan='2'>[[3n4e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pardp Pardp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N4E FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">69934097, Pden_0244 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~266 Paracoccus denitrificans~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">69934097, Pden_0244 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318586 PARDP])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3n4e RCSB], [http://www.ebi.ac.uk/pdbsum/3n4e PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4e OCA], [http://pdbe.org/3n4e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3n4e RCSB], [http://www.ebi.ac.uk/pdbsum/3n4e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3n4e ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n4e ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 23:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Paracoccus denitrificans~~]]		[[Category: Pardp]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]

OCA at 13:45, 6 November 2014

2014-11-06T13:45:11Z

← Older revision		Revision as of 13:45, 6 November 2014
Line 1:		Line 1:
	~~{{STRUCTURE_3n4e\| PDB=3n4e \| SCENE= }}~~		==CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222==
	===CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222===		<StructureSection load='3n4e' size='340' side='right' caption='[[3n4e]], [[Resolution\|resolution]] 2.40Å' scene=''>
			== Structural highlights ==
	==~~About this Structure~~==		<table><tr><td colspan='2'>[[3n4e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N4E FirstGlance]. <br>
	[[3n4e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4E OCA].		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
			<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">69934097, Pden_0244 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n4e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3n4e RCSB], [http://www.ebi.ac.uk/pdbsum/3n4e PDBsum]</span></td></tr>
			</table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n4/3n4e_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Mandelate racemase\|Mandelate racemase]]		*[[Mandelate racemase\|Mandelate racemase]]
			__TOC__
			</StructureSection>
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K]]
	[[Category: Malashkevich, V N.]]		[[Category: Malashkevich, V N]]
	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]		[[Category: Structural genomic]]
	[[Category: Sauder, J M.]]		[[Category: Sauder, J M]]
	[[Category: Toro, R.]]		[[Category: Toro, R]]
	[[Category: Crystal structure]]		[[Category: Crystal structure]]
	[[Category: Enolase]]		[[Category: Enolase]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~		[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
	~~[[Category: New york structural genomix research consortium]]~~		[[Category: PSI, Protein structure initiative]]
	~~[[Category: Nysgxrc~~]]
	[[Category: Protein structure initiative]]
	~~[[Category: Psi-2]]~~
	~~[[Category: Structural genomic~~]]

OCA: Protected "3n4e" [edit=sysop:move=sysop]

2013-03-11T10:04:03Z

Protected "3n4e" [edit=sysop:move=sysop]

← Older revision	Revision as of 10:04, 11 March 2013
(No difference)

OCA at 10:04, 11 March 2013

2013-03-11T10:04:00Z

← Older revision		Revision as of 10:04, 11 March 2013
Line 1:		Line 1:
	~~{{Seed}}~~
	~~[[Image:3n4e.jpg\|left\|200px]]~~

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3n4e", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3n4e\| PDB=3n4e \| SCENE= }}		{{STRUCTURE_3n4e\| PDB=3n4e \| SCENE= }}

	===CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222===		===CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222===

			==About this Structure==
			[[3n4e]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4E OCA].

	==~~About this Structure~~==		==See Also==
	~~3N4E is a 2 chains structure with sequences from~~ [~~http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans~~]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N4E OCA~~].		*[[Mandelate racemase\|Mandelate racemase]]
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]
Line 31:		Line 23:
	[[Category: Psi-2]]		[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 10 11:17:10 2010''~~

OCA at 07:12, 10 June 2010

2010-06-10T07:12:23Z

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
+{{Seed}}
-The entry 3n4e is ON HOLD
+<!--
-Authors: Malashkevich, V.N., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
+===CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222===
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun  2 08:28:48 2010''
+==About this Structure==

OCA: New page: '''Unreleased structure''' The entry 3n4e is ON HOLD Authors: Malashkevich, V.N., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics ...

2010-06-02T04:24:20Z

New page: '''Unreleased structure''' The entry 3n4e is ON HOLD Authors: Malashkevich, V.N., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics ...

New page

'''Unreleased structure'''

The entry 3n4e is ON HOLD

Authors: Malashkevich, V.N., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Description: CRYSTAL STRUCTURE OF mandelate racemase/muconate lactonizing protein from Paracoccus denitrificans Pd1222

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 2 08:28:48 2010''