3oop - Revision history

OCA at 06:36, 27 November 2024

2024-11-27T06:36:30Z

← Older revision		Revision as of 06:36, 27 November 2024
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	==The structure of a protein with unknown function from Listeria innocua Clip11262==		==The structure of a protein with unknown function from Listeria innocua Clip11262==
	<StructureSection load='3oop' size='340' side='right' caption='[[3oop]], [[Resolution\|resolution]] 1.78Å' scene=''>		<StructureSection load='3oop' size='340' side='right'caption='[[3oop]], [[Resolution\|resolution]] 1.78Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3oop]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Lisin Lisin~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3OOP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3oop]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_innocua_Clip11262 Listeria innocua Clip11262]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OOP FirstGlance]. <br>
	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.78Å</td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~lin2960 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272626 LISIN])~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3oop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oop OCA], [~~http~~://pdbe.org/3oop PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3oop RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3oop PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3oop ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oop OCA], [https://pdbe.org/3oop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oop RCSB], [https://www.ebi.ac.uk/pdbsum/3oop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oop ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q926T1_LISIN Q926T1_LISIN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/3oop_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/3oop_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/~~initialview01~~.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
Line 20:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Lisin~~]]		[[Category: Large Structures]]
	[[Category: Fan, Y]]		[[Category: Listeria innocua Clip11262]]
	[[Category: Gu, M]]		[[Category: Fan Y]]
	[[Category: Joachimiak, A]]		[[Category: Gu M]]
	[[Category: Li, H]]		[[Category: Joachimiak A]]
	~~[[Category: Structural genomic~~]]		[[Category: Li H]]
	[[Category: Zhou, Y]]		[[Category: Zhou Y]]
	~~[[Category: Mcsg]]~~
	~~[[Category: PSI, Protein structure initiative]]~~
	~~[[Category: Unknown function~~]]

OCA at 11:31, 4 August 2016

2016-08-04T11:31:21Z

← Older revision		Revision as of 11:31, 4 August 2016
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	==The structure of a protein with unknown function from Listeria innocua Clip11262==		==The structure of a protein with unknown function from Listeria innocua Clip11262==
	<StructureSection load='3oop' size='340' side='right' caption='[[3oop]], [[Resolution\|resolution]] 1.78Å' scene=''>		<StructureSection load='3oop' size='340' side='right' caption='[[3oop]], [[Resolution\|resolution]] 1.78Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3oop]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Listeria_innocua Listeria innocua~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OOP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3oop]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lisin Lisin]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OOP FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lin2960 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1642 Listeria innocua~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lin2960 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272626 LISIN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oop OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3oop RCSB], [http://www.ebi.ac.uk/pdbsum/3oop PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oop OCA], [http://pdbe.org/3oop PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3oop RCSB], [http://www.ebi.ac.uk/pdbsum/3oop PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3oop ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3oop ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Listeria innocua~~]]		[[Category: Lisin]]
	[[Category: Fan, Y]]		[[Category: Fan, Y]]
	[[Category: Gu, M]]		[[Category: Gu, M]]

OCA at 07:02, 19 December 2014

2014-12-19T07:02:31Z

← Older revision		Revision as of 07:02, 19 December 2014
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	~~{{STRUCTURE_3oop\| PDB=3oop \| SCENE= }}~~		==The structure of a protein with unknown function from Listeria innocua Clip11262==
	===The structure of a protein with unknown function from Listeria innocua Clip11262===		<StructureSection load='3oop' size='340' side='right' caption='[[3oop]], [[Resolution\|resolution]] 1.78Å' scene=''>
			== Structural highlights ==
	==~~About this Structure~~==		<table><tr><td colspan='2'>[[3oop]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_innocua Listeria innocua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OOP FirstGlance]. <br>
	[[3oop]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_innocua Listeria innocua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA].		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lin2960 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1642 Listeria innocua])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oop OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3oop RCSB], [http://www.ebi.ac.uk/pdbsum/3oop PDBsum]</span></td></tr>
			</table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/3oop_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			__TOC__
			</StructureSection>
	[[Category: Listeria innocua]]		[[Category: Listeria innocua]]
	[[Category: Fan, Y.]]		[[Category: Fan, Y]]
	[[Category: Gu, M.]]		[[Category: Gu, M]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A]]
	[[Category: Li, H.]]		[[Category: Li, H]]
	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]		[[Category: Structural genomic]]
	[[Category: Zhou, Y.]]		[[Category: Zhou, Y]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
	[[Category: ~~Midwest center for structural genomic]]~~		[[Category: PSI, Protein structure initiative]]
	~~[[Category:~~ Protein structure initiative]]
	~~[[Category: Psi-2]]~~
	~~[[Category: Structural genomic~~]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA: Protected "3oop" [edit=sysop:move=sysop]

2013-05-02T08:13:09Z

Protected "3oop" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:13, 2 May 2013
(No difference)

OCA at 08:13, 2 May 2013

2013-05-02T08:13:07Z

← Older revision		Revision as of 08:13, 2 May 2013
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	~~{{Seed}}~~
	~~[[Image:3oop.jpg\|left\|200px]]~~

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3oop", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3oop\| PDB=3oop \| SCENE= }}		{{STRUCTURE_3oop\| PDB=3oop \| SCENE= }}

	===The structure of a protein with unknown function from Listeria innocua Clip11262===		===The structure of a protein with unknown function from Listeria innocua Clip11262===


	==About this Structure==		==About this Structure==
	~~3OOP~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_innocua Listeria innocua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA].		[[3oop]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_innocua Listeria innocua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOP OCA].
	[[Category: Listeria innocua]]		[[Category: Listeria innocua]]
	[[Category: Fan, Y.]]		[[Category: Fan, Y.]]
Line 28:		Line 17:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 14:50:06 2010''~~

OCA at 11:41, 22 September 2010

2010-09-22T11:41:08Z

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
+{{Seed}}
-The entry 3oop is ON HOLD
+<!--
-Authors: Fan, Y., Li, H., Zhou, Y., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
+===The structure of a protein with unknown function from Listeria innocua Clip11262===
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:38:09 2010''
+==About this Structure==

OCA: New page: '''Unreleased structure''' The entry 3oop is ON HOLD Authors: Fan, Y., Li, H., Zhou, Y., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG) Description: The structur...

2010-09-15T07:29:27Z

New page: '''Unreleased structure''' The entry 3oop is ON HOLD Authors: Fan, Y., Li, H., Zhou, Y., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG) Description: The structur...

New page

'''Unreleased structure'''

The entry 3oop is ON HOLD

Authors: Fan, Y., Li, H., Zhou, Y., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Description: The structure of a protein with unknown function from Listeria innocua Clip11262

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:38:09 2010''