3phy - Revision history

OCA at 07:04, 16 March 2022

2022-03-16T07:04:43Z

← Older revision		Revision as of 07:04, 16 March 2022
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	==PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES==		==PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES==
	<StructureSection load='3phy' size='340' side='right' caption='[[3phy]], [[NMR_Ensembles_of_Models \| 26 NMR models]]' scene=''>		<StructureSection load='3phy' size='340' side='right'caption='[[3phy]], [[NMR_Ensembles_of_Models \| 26 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3phy]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3PHY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3phy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PHY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3phy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3phy OCA], [~~http~~://pdbe.org/3phy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3phy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3phy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3phy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3phy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3phy OCA], [https://pdbe.org/3phy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3phy RCSB], [https://www.ebi.ac.uk/pdbsum/3phy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3phy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA]] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.		[[https://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA]] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Halorhodospira halophila]]		[[Category: Halorhodospira halophila]]
			[[Category: Large Structures]]
	[[Category: Boelens, R]]		[[Category: Boelens, R]]
	[[Category: Crielaard, W]]		[[Category: Crielaard, W]]

OCA at 10:58, 13 February 2019

2019-02-13T10:58:51Z

← Older revision		Revision as of 10:58, 13 February 2019
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ph/3phy_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ph/3phy_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 18:11, 5 August 2016

2016-08-05T18:11:15Z

← Older revision		Revision as of 18:11, 5 August 2016
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	==PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES==		==PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES==
	<StructureSection load='3phy' size='340' side='right' caption='[[3phy]], [[NMR_Ensembles_of_Models \| 26 NMR models]]' scene=''>		<StructureSection load='3phy' size='340' side='right' caption='[[3phy]], [[NMR_Ensembles_of_Models \| 26 NMR models]]' scene=''>
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	<table><tr><td colspan='2'>[[3phy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PHY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3phy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PHY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3phy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3phy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3phy RCSB], [http://www.ebi.ac.uk/pdbsum/3phy PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3phy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3phy OCA], [http://pdbe.org/3phy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3phy RCSB], [http://www.ebi.ac.uk/pdbsum/3phy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3phy ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA]] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3phy ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 3phy" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:25, 19 December 2014

2014-12-19T07:25:52Z

← Older revision		Revision as of 07:25, 19 December 2014
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	~~{{STRUCTURE_3phy\| PDB=3phy \| SCENE= }}~~		==PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES==
	===PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES===		<StructureSection load='3phy' size='340' side='right' caption='[[3phy]], [[NMR_Ensembles_of_Models \| 26 NMR models]]' scene=''>
	~~{{ABSTRACT_PUBMED_9737845}}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[3phy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PHY FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3phy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3phy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3phy RCSB], [http://www.ebi.ac.uk/pdbsum/3phy PDBsum]</span></td></tr>
			</table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ph/3phy_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The solution structure of photoactive yellow protein (PYP), a photosensory protein from Ectothiorhodospira halophila, has been determined by multidimensional NMR spectroscopy. The structure consists of an open, twisted, 6-stranded, antiparallel beta-sheet, which is flanked by four alpha-helices on both sides. The final set of 26 selected structures is well-defined for the regions spanning residues Phe6-Ala16, Asp24-Ala112, and Tyr118-Val125 and displays a root-mean-square deviation, versus the average, of 0.45 A for the backbone and 0.88 A for all heavy atoms. Comparison of the solution structure with an earlier published 1.4 A crystal structure (Borgstahl, G. E. O., Williams, D. R., and Getzoff, E. D. (1995) Biochemistry 34, 6278-6287) reveals a similarity with a root-mean-square deviation of 1.77 A for the backbone for the well-defined regions. The most distinct difference in the backbone with the crystal structure is found near the N-terminus, for residues Asp19-Leu23, which corresponds to an alpha-helix in the crystal structure and to one of the poorest defined regions in the solution structure. To characterize the dynamic behavior of PYP in solution, we undertook a 15N relaxation study and measurements of hydrogen/deuterium exchange. Determination of order parameters through the model-free Lipari-Szabo approach enabled the identification of several regions of enhanced dynamics. The comparison of atomic displacements in the backbone traces of the ensemble structures, with mobility measurements from NMR, show that the poorly defined regions feature fast internal motions in the nanosecond to picosecond time scale.

	~~==About this Structure==~~		Solution structure and backbone dynamics of the photoactive yellow protein.,Dux P, Rubinstenn G, Vuister GW, Boelens R, Mulder FA, Hard K, Hoff WD, Kroon AR, Crielaard W, Hellingwerf KJ, Kaptein R Biochemistry. 1998 Sep 15;37(37):12689-99. PMID:9737845<ref>PMID:9737845</ref>
	~~[[3phy]] is a 1 chain~~ structure ~~with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Halorhodospira_halophila Halorhodospira halophila]~~. ~~Full experimental information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA].~~

	==~~Reference~~==		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	~~<ref group="xtra">PMID:009737845</ref>~~<references ~~group="xtra"~~/><~~references~~/>		</div>
			== References ==
			<references/>
			__TOC__
			</StructureSection>
	[[Category: Halorhodospira halophila]]		[[Category: Halorhodospira halophila]]
	[[Category: Boelens, R.]]		[[Category: Boelens, R]]
	[[Category: Crielaard, W.]]		[[Category: Crielaard, W]]
	[[Category: Dux, P.]]		[[Category: Dux, P]]
	[[Category: Hard, K.]]		[[Category: Hard, K]]
	[[Category: Hellingwerf, K J.]]		[[Category: Hellingwerf, K J]]
	[[Category: Hoff, W D.]]		[[Category: Hoff, W D]]
	[[Category: Kaptein, R.]]		[[Category: Kaptein, R]]
	[[Category: Kroon, A.]]		[[Category: Kroon, A]]
	[[Category: Mulder, F A.A.]]		[[Category: Mulder, F A.A]]
	[[Category: Rubinstenn, G.]]		[[Category: Rubinstenn, G]]
	[[Category: Vuister, G W.]]		[[Category: Vuister, G W]]
	[[Category: Light sensor for negative phototaxis]]		[[Category: Light sensor for negative phototaxis]]
	[[Category: Photoreceptor]]		[[Category: Photoreceptor]]

OCA: Protected "3phy" [edit=sysop:move=sysop]

2013-05-08T08:35:44Z

Protected "3phy" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:35, 8 May 2013
(No difference)

OCA at 08:35, 8 May 2013

2013-05-08T08:35:40Z

← Older revision		Revision as of 08:35, 8 May 2013
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	~~{{Seed}}~~
	~~[[Image:3phy.png\|left\|200px]]~~

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3phy", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3phy\| PDB=3phy \| SCENE= }}		{{STRUCTURE_3phy\| PDB=3phy \| SCENE= }}

	===PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES===		===PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_9737845}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 9737845 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_9737845}}		{{ABSTRACT_PUBMED_9737845}}

	==About this Structure==		==About this Structure==
	~~3PHY~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA].		[[3phy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~9737845~~</ref><references group="xtra"/>		<ref group="xtra">PMID:009737845</ref><references group="xtra"/><references/>
	[[Category: Halorhodospira halophila]]		[[Category: Halorhodospira halophila]]
	[[Category: Boelens, R.]]		[[Category: Boelens, R.]]
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	[[Category: Light sensor for negative phototaxis]]		[[Category: Light sensor for negative phototaxis]]
	[[Category: Photoreceptor]]		[[Category: Photoreceptor]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 06:52:56 2009''~~

OCA at 04:52, 18 February 2009

2009-02-18T04:52:57Z

← Older revision		Revision as of 04:52, 18 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
	3PHY is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA].		3PHY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA].

	==Reference==		==Reference==
	Solution structure and backbone dynamics of the photoactive yellow protein., Dux P, Rubinstenn G, Vuister GW, Boelens R, Mulder FA, Hard K, Hoff WD, Kroon AR, Crielaard W, Hellingwerf KJ, Kaptein R, Biochemistry. 1998 Sep 15;37(37):12689-99. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/9737845 9737845]~~		<ref group="xtra">PMID:9737845</ref><references group="xtra"/>
	[[Category: Halorhodospira halophila]]		[[Category: Halorhodospira halophila]]
	~~[[Category: Single protein]]~~
	[[Category: Boelens, R.]]		[[Category: Boelens, R.]]
	[[Category: Crielaard, W.]]		[[Category: Crielaard, W.]]
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	[[Category: Photoreceptor]]		[[Category: Photoreceptor]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Jul 3 13~~:02:~~25 2008~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 06:52:56 2009''

OCA at 10:02, 3 July 2008

2008-07-03T10:02:26Z

← Older revision		Revision as of 10:02, 3 July 2008
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	[[Image:3phy.~~jpg~~\|left\|200px]]		{{Seed}}
			[[Image:3phy.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_3phy\| PDB=3phy \| SCENE= }}		{{STRUCTURE_3phy\| PDB=3phy \| SCENE= }}

	~~'''~~PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES~~'''~~		===PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES===


	~~==Overview==~~		<!--
	The solution structure of photoactive yellow protein (PYP), a photosensory protein from Ectothiorhodospira halophila, has been determined by multidimensional NMR spectroscopy. The structure consists of an open, twisted, 6-stranded, antiparallel beta-~~sheet, which is flanked by four alpha~~-~~helices on both sides.~~ The ~~final set of 26 selected structures is well-defined for the regions spanning residues Phe6-Ala16, Asp24-Ala112~~, ~~and Tyr118-Val125 and displays a root-mean-square deviation~~, ~~versus~~ the ~~average, of 0.45 A for~~ the ~~backbone and 0.88 A for all heavy atoms. Comparison of the solution structure with an earlier published 1.4 A crystal structure~~ (~~Borgstahl, G. E. O., Williams, D. R., and Getzoff, E~~. D. ~~(1995~~) ~~Biochemistry 34~~, ~~6278-6287) reveals a similarity with a root-mean-square deviation of 1.77 A for the backbone for the well-defined regions. The most distinct difference in the backbone with the crystal structure~~ is ~~found near the N-terminus, for residues Asp19-Leu23, which corresponds to an alpha-helix in the crystal structure and to one of the poorest defined regions in~~ the ~~solution structure~~. ~~To characterize the dynamic behavior of PYP in solution, we undertook a 15N relaxation study and measurements of hydrogen/deuterium exchange. Determination of order parameters through the model~~-~~free Lipari~~-Szabo approach enabled the identification of several regions of enhanced dynamics. The comparison of atomic displacements in the backbone traces of the ensemble structures, with mobility measurements from NMR, show that the poorly defined regions feature fast internal motions in the nanosecond to picosecond time scale.		The line below this paragraph, {{ABSTRACT_PUBMED_9737845}}, adds the Publication Abstract to the page
			(as it appears on PubMed at http://www.pubmed.gov), where 9737845 is the PubMed ID number.
			-->
			{{ABSTRACT_PUBMED_9737845}}

	==About this Structure==		==About this Structure==
	3PHY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA].		3PHY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PHY OCA].

	==Reference==		==Reference==
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	[[Category: Light sensor for negative phototaxis]]		[[Category: Light sensor for negative phototaxis]]
	[[Category: Photoreceptor]]		[[Category: Photoreceptor]]
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May~~ ~~4 22~~:10:38 2008''
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 13:02:25 2008''

OCA at 19:10, 4 May 2008

2008-05-04T19:10:40Z

← Older revision		Revision as of 19:10, 4 May 2008
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	[[Image:3phy.jpg\|left\|200px]]		[[Image:3phy.jpg\|left\|200px]]

	{{Structure		<!--
	\|PDB~~= 3phy \|SIZE=350\|CAPTION= <~~scene ~~name='initialview01'>3phy</scene>~~		The line below this paragraph, containing "STRUCTURE_3phy", creates the "Structure Box" on the page.
	~~\|SITE=~~		You may change the PDB parameter (which sets the PDB file loaded into the applet)
	~~\|LIGAND= <scene name='pdbligand=HC4:4'~~-~~HYDROXYCINNAMIC+ACID'>HC4</scene~~>		or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
	\|~~ACTIVITY~~=		or leave the SCENE parameter empty for the default display.
	\|~~GENE~~=		-->
	~~\|DOMAIN=~~		{{STRUCTURE_3phy\| PDB=3phy \| SCENE= }}
	~~\|RELATEDENTRY=~~
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3phy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3phy OCA], [http://www.ebi.ac.uk/pdbsum/3phy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3phy RCSB]</span>
	}}

	'''PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES'''		'''PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES'''
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	[[Category: Rubinstenn, G.]]		[[Category: Rubinstenn, G.]]
	[[Category: Vuister, G W.]]		[[Category: Vuister, G W.]]
	[[Category: ~~light~~ sensor for negative phototaxis]]		[[Category: Light sensor for negative phototaxis]]
	[[Category: ~~photoreceptor~~]]		[[Category: Photoreceptor]]
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 22:10:38 2008''
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 05~~:35:26 2008''

OCA at 02:35, 31 March 2008

2008-03-31T02:35:26Z

← Older revision		Revision as of 02:35, 31 March 2008
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	\|PDB= 3phy \|SIZE=350\|CAPTION= <scene name='initialview01'>3phy</scene>		\|PDB= 3phy \|SIZE=350\|CAPTION= <scene name='initialview01'>3phy</scene>
	\|SITE=		\|SITE=
	\|LIGAND= <scene name='pdbligand=HC4:4'-HYDROXYCINNAMIC ACID'>HC4</scene>		\|LIGAND= <scene name='pdbligand=HC4:4'-HYDROXYCINNAMIC+ACID'>HC4</scene>
	\|ACTIVITY=		\|ACTIVITY=
	\|GENE=		\|GENE=
			\|DOMAIN=
			\|RELATEDENTRY=
			\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3phy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3phy OCA], [http://www.ebi.ac.uk/pdbsum/3phy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3phy RCSB]</span>
	}}		}}

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	[[Category: Rubinstenn, G.]]		[[Category: Rubinstenn, G.]]
	[[Category: Vuister, G W.]]		[[Category: Vuister, G W.]]
	~~[[Category: HC4]]~~
	[[Category: light sensor for negative phototaxis]]		[[Category: light sensor for negative phototaxis]]
	[[Category: photoreceptor]]		[[Category: photoreceptor]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun~~ Mar ~~23 16~~:03:12 2008''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:35:26 2008''