3rn3 - Revision history

OCA at 13:51, 25 December 2019

2019-12-25T13:51:32Z

← Older revision		Revision as of 13:51, 25 December 2019
Line 1:		Line 1:

	==SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL==		==SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL==
	<StructureSection load='3rn3' size='340' side='right' caption='[[3rn3]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='3rn3' size='340' side='right'caption='[[3rn3]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3rn3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovin Bovin]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RN3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3rn3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovin Bovin]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RN3 FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rn/3rn3_consurf.spt"</scriptWhenChecked>		<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rn/3rn3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 31:		Line 31:

	==See Also==		==See Also==
			*[[Ribonuclease 3D structures\|Ribonuclease 3D structures]]
	*[[Temp\|Temp]]		*[[Temp\|Temp]]
	== References ==		== References ==
Line 37:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Bovin]]		[[Category: Bovin]]
			[[Category: Large Structures]]
	[[Category: Pancreatic ribonuclease]]		[[Category: Pancreatic ribonuclease]]
	[[Category: Harris, G W]]		[[Category: Harris, G W]]

OCA at 07:17, 29 November 2017

2017-11-29T07:17:26Z

← Older revision		Revision as of 07:17, 29 November 2017
Line 1:		Line 1:

	==SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL==		==SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL==
	<StructureSection load='3rn3' size='340' side='right' caption='[[3rn3]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='3rn3' size='340' side='right' caption='[[3rn3]], [[Resolution\|resolution]] 1.45Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rn3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rn3 OCA], [http://pdbe.org/3rn3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3rn3 RCSB], [http://www.ebi.ac.uk/pdbsum/3rn3 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rn3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rn3 OCA], [http://pdbe.org/3rn3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3rn3 RCSB], [http://www.ebi.ac.uk/pdbsum/3rn3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3rn3 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 30:		Line 31:

	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]
	*[[Temp\|Temp]]		*[[Temp\|Temp]]
	== References ==		== References ==

OCA at 18:27, 8 February 2016

2016-02-08T18:27:01Z

← Older revision		Revision as of 18:27, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3rn3' size='340' side='right' caption='[[3rn3]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='3rn3' size='340' side='right' caption='[[3rn3]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3rn3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bos_taurus Bos taurus~~]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RN3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3rn3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovin Bovin]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RN3 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rn3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rn3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rn3 RCSB], [http://www.ebi.ac.uk/pdbsum/3rn3 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rn3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rn3 OCA], [http://pdbe.org/3rn3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3rn3 RCSB], [http://www.ebi.ac.uk/pdbsum/3rn3 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3rn3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 3rn3" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
	*[[Temp\|Temp]]		*[[Temp\|Temp]]
	*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bos taurus~~]]		[[Category: Bovin]]
	[[Category: Pancreatic ribonuclease]]		[[Category: Pancreatic ribonuclease]]
	[[Category: Harris, G W]]		[[Category: Harris, G W]]

OCA at 01:17, 25 December 2014

2014-12-25T01:17:49Z

← Older revision		Revision as of 01:17, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rn3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rn3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rn3 RCSB], [http://www.ebi.ac.uk/pdbsum/3rn3 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rn3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rn3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rn3 RCSB], [http://www.ebi.ac.uk/pdbsum/3rn3 PDBsum]</span></td></tr>
	</table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/RNAS1_BOVIN RNAS1_BOVIN]] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:7479688</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 30:
	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
			*[[Temp\|Temp]]
	*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]		*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]
	== References ==		== References ==

OCA at 13:04, 9 December 2014

2014-12-09T13:04:52Z

← Older revision		Revision as of 13:04, 9 December 2014
Line 1:		Line 1:
	[[Image:~~3rn3~~.~~png~~\|~~left~~\|~~200px~~]]		==SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL==
			<StructureSection load='3rn3' size='340' side='right' caption='[[3rn3]], [[Resolution\|resolution]] 1.45Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[3rn3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RN3 FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
			<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rn3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rn3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rn3 RCSB], [http://www.ebi.ac.uk/pdbsum/3rn3 PDBsum]</span></td></tr>
			</table>
			== Evolutionary Conservation ==
			[[Image:Consurf_key_small.gif\|200px\|right]]
			Check<jmol>
			<jmolCheckbox>
			<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rn/3rn3_consurf.spt"</scriptWhenChecked>
			<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
			<text>to colour the structure by Evolutionary Conservation</text>
			</jmolCheckbox>
			</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
			<div style="clear:both"></div>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The anisotropic displacements of selected rigid groups in bovine ribonuclease A have been refined from X-ray diffraction data by the application of the rigid-body TLS model. The rigid groups chosen were the side chains of tyrosine, histidine and phenylalanine and the planar side chains of aspartic acid, glutamic acid, glutamine, asparagine and arginine. The method has also been applied to the co-crystallizing active-site sulfate anion. This has enabled the description of the motion of the above-mentioned side-chain atoms by anisotropic displacement ellipsoids from a 1.45 A refinement. The hydrophobic side groups in the protein core show mainly translational motion, with mean-square librations of 20 deg2 which are similar to those found in some close-packed crystals of small organic molecules. Librational displacements are much more significant in the hydrophilic side groups where their magnitudes can be correlated with solvent accessibility. Large librations of some solvent exposed side chains correspond with the breakdown of a simple TLS model and the existence of multiple orientations of the side groups. The TLS model has also been applied to the whole protein molecule and shows that the average motion is approximately isotropic with little librational character.

	~~{{STRUCTURE_3rn3\| PDB=3rn3 \| SCENE= }}~~		Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid-body TLS model.,Howlin B, Moss DS, Harris GW Acta Crystallogr A. 1989 Dec 1;45 ( Pt 12):851-61. PMID:2619965<ref>PMID:2619965</ref>

	~~===SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_2619965}}~~

	~~==About this Structure==~~
	~~[[3rn3]] is~~ a ~~1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. This structure supersedes~~ the ~~now removed PDB entry [http://oca~~.~~weizmann~~.ac.~~il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http:/~~/~~oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA].~~

	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
			*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]
	==~~Reference~~==		== References ==
	<~~ref group="xtra">PMID:002619965<~~/~~ref~~><~~references group="xtra"~~/>		<references/>
			__TOC__
			</StructureSection>
	[[Category: Bos taurus]]		[[Category: Bos taurus]]
	[[Category: Pancreatic ribonuclease]]		[[Category: Pancreatic ribonuclease]]
	[[Category: Harris, G W.]]		[[Category: Harris, G W]]
	[[Category: Howlin, B.]]		[[Category: Howlin, B]]
	[[Category: Moss, D S.]]		[[Category: Moss, D S]]
	[[Category: Palmer, R A.]]		[[Category: Palmer, R A]]

OCA at 11:04, 20 October 2012

2012-10-20T11:04:03Z

← Older revision		Revision as of 11:04, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
	[[3rn3]] is a 1 chain structure ~~of [[Ribonuclease]]~~ with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA].		[[3rn3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA].

	==See Also==		==See Also==

OCA: Protected "3rn3" [edit=sysop:move=sysop]

2012-07-26T04:08:23Z

Protected "3rn3" [edit=sysop:move=sysop]

← Older revision	Revision as of 04:08, 26 July 2012
(No difference)

OCA at 04:08, 26 July 2012

2012-07-26T04:08:21Z

← Older revision		Revision as of 04:08, 26 July 2012
Line 1:		Line 1:
	~~{{Seed}}~~
	[[Image:3rn3.png\|left\|200px]]		[[Image:3rn3.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_3rn3", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_3rn3\| PDB=3rn3 \| SCENE= }}		{{STRUCTURE_3rn3\| PDB=3rn3 \| SCENE= }}

	===SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL===		===SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_2619965}}, adds the Publication Abstract to the page~~
	~~(as it appears on PubMed at http://www.pubmed.gov), where 2619965 is the PubMed ID number.~~
	~~-->~~
	{{ABSTRACT_PUBMED_2619965}}		{{ABSTRACT_PUBMED_2619965}}

	==About this Structure==		==About this Structure==
	~~3RN3~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA].		[[3rn3]] is a 1 chain structure of [[Ribonuclease]] with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA].

			==See Also==
			*[[Ribonuclease\|Ribonuclease]]

	==Reference==		==Reference==
	<ref group="xtra">PMID:~~2619965~~</ref><references group="xtra"/>		<ref group="xtra">PMID:002619965</ref><references group="xtra"/>
	[[Category: Bos taurus]]		[[Category: Bos taurus]]
	[[Category: Pancreatic ribonuclease]]		[[Category: Pancreatic ribonuclease]]
Line 30:		Line 21:
	[[Category: Moss, D S.]]		[[Category: Moss, D S.]]
	[[Category: Palmer, R A.]]		[[Category: Palmer, R A.]]

	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 01:27:42 2009''~~

OCA at 23:28, 16 February 2009

2009-02-16T23:28:03Z

← Older revision		Revision as of 23:28, 16 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
	3RN3 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA].		3RN3 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1rn3 1rn3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN3 OCA].

	==Reference==		==Reference==
	~~Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid-body TLS model., Howlin B, Moss DS, Harris GW, Acta Crystallogr A. 1989 Dec 1;45 ( Pt 12):851-61.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/2619965 2619965]~~		<ref group="xtra">PMID:2619965</ref><references group="xtra"/>
	[[Category: Bos taurus]]		[[Category: Bos taurus]]
	[[Category: Pancreatic ribonuclease]]		[[Category: Pancreatic ribonuclease]]
	~~[[Category: Single protein]]~~
	[[Category: Harris, G W.]]		[[Category: Harris, G W.]]
	[[Category: Howlin, B.]]		[[Category: Howlin, B.]]
Line 32:		Line 31:
	[[Category: Palmer, R A.]]		[[Category: Palmer, R A.]]

	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Jul 3 13~~:05:~~33 2008~~''		''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 01:27:42 2009''

OCA at 10:05, 3 July 2008

2008-07-03T10:05:34Z

← Older revision		Revision as of 10:05, 3 July 2008
Line 1:		Line 1:
	[[Image:3rn3.~~jpg~~\|left\|200px]]		{{Seed}}
			[[Image:3rn3.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_3rn3\| PDB=3rn3 \| SCENE= }}		{{STRUCTURE_3rn3\| PDB=3rn3 \| SCENE= }}

	~~'''~~SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL~~'''~~		===SEGMENTED ANISOTROPIC REFINEMENT OF BOVINE RIBONUCLEASE A BY THE APPLICATION OF THE RIGID-BODY TLS MODEL===


	~~==Overview==~~		<!--
	~~The anisotropic displacements of selected rigid groups in bovine ribonuclease A have been refined from X~~-~~ray diffraction data by the application of the rigid~~-~~body TLS model.~~ The ~~rigid groups chosen were the side chains of tyrosine~~, ~~histidine and phenylalanine and~~ the ~~planar side chains of aspartic acid, glutamic acid, glutamine, asparagine and arginine. The method has also been applied~~ to the ~~co-crystallizing active-site sulfate anion~~. ~~This has enabled the description of the motion of the above-mentioned side-chain atoms by anisotropic displacement ellipsoids from a 1~~.~~45 A refinement. The hydrophobic side groups in the protein core show mainly translational motion~~, with mean-square librations of 20 deg2 which are similar to those found in some close-packed crystals of small organic molecules. Librational displacements are much more significant in the hydrophilic side groups where ~~their magnitudes can be correlated with solvent accessibility. Large librations of some solvent exposed side chains correspond with~~ the breakdown of a simple TLS model and the existence of multiple orientations of the side groups. The TLS model has also been applied to the whole protein molecule and shows that the average motion is approximately isotropic with little librational character.		The line below this paragraph, {{ABSTRACT_PUBMED_2619965}}, adds the Publication Abstract to the page
			(as it appears on PubMed at http://www.pubmed.gov), where 2619965 is the PubMed ID number.
			-->
			{{ABSTRACT_PUBMED_2619965}}

	==About this Structure==		==About this Structure==
Line 27:		Line 31:
	[[Category: Moss, D S.]]		[[Category: Moss, D S.]]
	[[Category: Palmer, R A.]]		[[Category: Palmer, R A.]]
	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May~~ ~~4 22~~:12:15 2008''
			''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 13:05:33 2008''