3vb0 - Revision history

OCA at 10:34, 1 March 2024

2024-03-01T10:34:39Z

← Older revision		Revision as of 10:34, 1 March 2024
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	<StructureSection load='3vb0' size='340' side='right'caption='[[3vb0]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3vb0' size='340' side='right'caption='[[3vb0]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3vb0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Sphww Sphww~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VB0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3vb0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizorhabdus_wittichii_RW1 Rhizorhabdus wittichii RW1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VB0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dbfB, Swit_4902 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=392499 SPHWW])~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vb0 OCA], [https://pdbe.org/3vb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vb0 RCSB], [https://www.ebi.ac.uk/pdbsum/3vb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vb0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vb0 OCA], [https://pdbe.org/3vb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vb0 RCSB], [https://www.ebi.ac.uk/pdbsum/3vb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vb0 ProSAT]</span></td></tr>
	</table>		</table>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Sphww~~]]		[[Category: Rhizorhabdus wittichii RW1]]
	[[Category: Bolin~~, J T~~]]		[[Category: Bolin JT]]
	[[Category: Koksal, M]]		[[Category: Koksal M]]
	[[Category: Kumar, P]]		[[Category: Kumar P]]
	~~[[Category: Extradiol dioxygenase]]~~
	~~[[Category: Hypersymmetry]]~~
	~~[[Category: Oxidoreductase]]~~
	~~[[Category: Translational non-crystallographic symmetry]]~~
	~~[[Category: Unusual crystal packing~~]]

OCA at 18:36, 27 July 2022

2022-07-27T18:36:00Z

← Older revision		Revision as of 18:36, 27 July 2022
Line 1:		Line 1:

	==Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1==		==Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1==
	<StructureSection load='3vb0' size='340' side='right' caption='[[3vb0]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3vb0' size='340' side='right'caption='[[3vb0]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3vb0]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Sphww Sphww]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VB0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3VB0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3vb0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphww Sphww]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VB0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dbfB, Swit_4902 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=392499 SPHWW])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dbfB, Swit_4902 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=392499 SPHWW])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3vb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vb0 OCA], [~~http~~://pdbe.org/3vb0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3vb0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3vb0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3vb0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vb0 OCA], [https://pdbe.org/3vb0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vb0 RCSB], [https://www.ebi.ac.uk/pdbsum/3vb0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vb0 ProSAT]</span></td></tr>
	</table>		</table>

			==See Also==
			*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
			*[[Glyoxalase 3D structures\|Glyoxalase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Sphww]]		[[Category: Sphww]]
	[[Category: Bolin, J T]]		[[Category: Bolin, J T]]

OCA at 10:14, 8 November 2017

2017-11-08T10:14:47Z

← Older revision		Revision as of 10:14, 8 November 2017
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vb0 OCA], [http://pdbe.org/3vb0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vb0 RCSB], [http://www.ebi.ac.uk/pdbsum/3vb0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vb0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vb0 OCA], [http://pdbe.org/3vb0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vb0 RCSB], [http://www.ebi.ac.uk/pdbsum/3vb0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vb0 ProSAT]</span></td></tr>
	</table>		</table>

	~~==See Also==~~
	*[[Dioxygenase\|Dioxygenase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 02:48, 5 August 2016

2016-08-05T02:48:38Z

← Older revision		Revision as of 02:48, 5 August 2016
Line 1:		Line 1:

	==Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1==		==Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1==
	<StructureSection load='3vb0' size='340' side='right' caption='[[3vb0]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3vb0' size='340' side='right' caption='[[3vb0]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3vb0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sphingomonas_wittichii_rw1 Sphingomonas wittichii rw1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VB0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VB0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3vb0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphww Sphww]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VB0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VB0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dbfB, Swit_4902 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=392499 ~~Sphingomonas wittichii RW1~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dbfB, Swit_4902 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=392499 SPHWW])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vb0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vb0 RCSB], [http://www.ebi.ac.uk/pdbsum/3vb0 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vb0 OCA], [http://pdbe.org/3vb0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vb0 RCSB], [http://www.ebi.ac.uk/pdbsum/3vb0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vb0 ProSAT]</span></td></tr>
	</table>		</table>

			==See Also==
			*[[Dioxygenase\|Dioxygenase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Sphingomonas wittichii rw1~~]]		[[Category: Sphww]]
	[[Category: Bolin, J T]]		[[Category: Bolin, J T]]
	[[Category: Koksal, M]]		[[Category: Koksal, M]]

OCA at 06:46, 21 December 2014

2014-12-21T06:46:01Z

← Older revision		Revision as of 06:46, 21 December 2014
Line 1:		Line 1:
	~~{{STRUCTURE_3vb0\| PDB=3vb0 \| SCENE= }}~~		==Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1==
	===Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1===		<StructureSection load='3vb0' size='340' side='right' caption='[[3vb0]], [[Resolution\|resolution]] 2.10Å' scene=''>
			== Structural highlights ==
	==~~About this Structure~~==		<table><tr><td colspan='2'>[[3vb0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas_wittichii_rw1 Sphingomonas wittichii rw1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VB0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VB0 FirstGlance]. <br>
	[[3vb0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas_wittichii_rw1 Sphingomonas wittichii rw1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VB0 OCA].		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dbfB, Swit_4902 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=392499 Sphingomonas wittichii RW1])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vb0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vb0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vb0 RCSB], [http://www.ebi.ac.uk/pdbsum/3vb0 PDBsum]</span></td></tr>
			</table>
			__TOC__
			</StructureSection>
	[[Category: Sphingomonas wittichii rw1]]		[[Category: Sphingomonas wittichii rw1]]
	[[Category: Bolin, J T.]]		[[Category: Bolin, J T]]
	[[Category: Koksal, M.]]		[[Category: Koksal, M]]
	[[Category: Kumar, P.]]		[[Category: Kumar, P]]
	[[Category: Extradiol dioxygenase]]		[[Category: Extradiol dioxygenase]]
	[[Category: Hypersymmetry]]		[[Category: Hypersymmetry]]

OCA at 01:39, 4 April 2013

2013-04-04T01:39:07Z

← Older revision		Revision as of 01:39, 4 April 2013
Line 1:		Line 1:
	~~'''Unreleased~~ structure'''		{{STRUCTURE_3vb0\| PDB=3vb0 \| SCENE= }}
			===Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1===

	~~The entry~~ 3vb0 is ~~ON HOLD until Apr 03 2014~~		==About this Structure==
			[[3vb0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas_wittichii_rw1 Sphingomonas wittichii rw1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VB0 OCA].
	~~Authors~~: Koksal, M., Kumar, P.~~, Bolin, J.T.~~		[[Category: Sphingomonas wittichii rw1]]
			[[Category: Bolin, J T.]]
	~~Description~~: ~~Crystal structure of 2,2',3~~-~~trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1~~		[[Category: Koksal, M.]]
			[[Category: Kumar, P.]]
			[[Category: Extradiol dioxygenase]]
			[[Category: Hypersymmetry]]
			[[Category: Oxidoreductase]]
			[[Category: Translational non-crystallographic symmetry]]
			[[Category: Unusual crystal packing]]

OCA at 08:34, 2 January 2013

2013-01-02T08:34:28Z

← Older revision		Revision as of 08:34, 2 January 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 3vb0 is ON HOLD until ~~Paper Publication~~		The entry 3vb0 is ON HOLD until Apr 03 2014

	Authors: Koksal, M., Kumar, P., Bolin, J.T.		Authors: Koksal, M., Kumar, P., Bolin, J.T.

	Description: Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1		Description: Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1

OCA at 07:20, 18 April 2012

2012-04-18T07:20:56Z

← Older revision		Revision as of 07:20, 18 April 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 3vb0 is ON HOLD		The entry 3vb0 is ON HOLD until Paper Publication

	Authors: Koksal, M., Kumar, P., Bolin, J.T.		Authors: Koksal, M., Kumar, P., Bolin, J.T.

	Description: Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1		Description: Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1

OCA: Protected "3vb0" [edit=sysop:move=sysop]

2012-01-11T05:59:51Z

Protected "3vb0" [edit=sysop:move=sysop]

← Older revision	Revision as of 05:59, 11 January 2012
(No difference)

OCA: New page: '''Unreleased structure''' The entry 3vb0 is ON HOLD Authors: Koksal, M., Kumar, P., Bolin, J.T. Description: Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenz...

2012-01-11T05:59:50Z

New page: '''Unreleased structure''' The entry 3vb0 is ON HOLD Authors: Koksal, M., Kumar, P., Bolin, J.T. Description: Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenz...

New page

'''Unreleased structure'''

The entry 3vb0 is ON HOLD

Authors: Koksal, M., Kumar, P., Bolin, J.T.

Description: Crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from dibenzofuran-degrading Sphingomonas wittichii strain RW1