3vmw - Revision history

OCA at 12:27, 8 November 2023

2023-11-08T12:27:46Z

← Older revision		Revision as of 12:27, 8 November 2023
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	<StructureSection load='3vmw' size='340' side='right'caption='[[3vmw]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3vmw' size='340' side='right'caption='[[3vmw]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp.~~_n16~~-5 Bacillus sp. ~~n16~~-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VMW FirstGlance]. <br>		<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._N16-5 Bacillus sp. N16-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VMW FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~, ~~<scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[3vmv\|3vmv]]</div>~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>GU088530, pelA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~122631 Bacillus sp. N16-5])</td~~><~~/tr>~~
	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2]~~ </~~span~~></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [https://pdbe.org/3vmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [https://www.ebi.ac.uk/pdbsum/3vmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [https://pdbe.org/3vmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [https://www.ebi.ac.uk/pdbsum/3vmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmw ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/D0VP31_9BACI D0VP31_9BACI]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacillus sp. ~~n16~~-5]]		[[Category: Bacillus sp. N16-5]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: Pectate lyase]]~~		[[Category: Guo RT]]
	[[Category: Guo~~, R T~~]]		[[Category: Huang CH]]
	[[Category: Huang~~, C H~~]]		[[Category: Ko TP]]
	[[Category: Ko~~, T P~~]]		[[Category: Liu W]]
	[[Category: Liu, W]]		[[Category: Ma Y]]
	[[Category: Ma, Y]]		[[Category: Xue Y]]
	[[Category: Xue, Y]]		[[Category: Zhang G]]
	[[Category: Zhang, G]]		[[Category: Zheng Y]]
	[[Category: Zheng, Y]]		[[Category: Zhou C]]
	[[Category: Zhou, C]]
	~~[[Category: Beta-helix]]~~
	~~[[Category: Lyase]]~~
	~~[[Category: Pectolytic]]~~
	~~[[Category: Polygalacturonate]]~~
	~~[[Category: Polysaccharide lyase family 1~~]]

OCA at 18:53, 27 July 2022

2022-07-27T18:53:33Z

← Older revision		Revision as of 18:53, 27 July 2022
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	==Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate==		==Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate==
	<StructureSection load='3vmw' size='340' side='right' caption='[[3vmw]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3vmw' size='340' side='right'caption='[[3vmw]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bacillus_sp._n16-5 Bacillus sp. n16-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3VMW FirstGlance]. <br>		<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._n16-5 Bacillus sp. n16-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VMW FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vmv\|3vmv]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vmv\|3vmv]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122631 Bacillus sp. N16-5])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122631 Bacillus sp. N16-5])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [~~http~~://pdbe.org/3vmw PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3vmw PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [https://pdbe.org/3vmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [https://www.ebi.ac.uk/pdbsum/3vmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmw ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus sp. n16-5]]		[[Category: Bacillus sp. n16-5]]
			[[Category: Large Structures]]
	[[Category: Pectate lyase]]		[[Category: Pectate lyase]]
	[[Category: Guo, R T]]		[[Category: Guo, R T]]

OCA at 09:39, 11 August 2016

2016-08-11T09:39:14Z

← Older revision		Revision as of 09:39, 11 August 2016
Line 1:		Line 1:

	==Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate==		==Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate==
	<StructureSection load='3vmw' size='340' side='right' caption='[[3vmw]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3vmw' size='340' side='right' caption='[[3vmw]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus ~~Bacillus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VMW FirstGlance]. <br>		<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_sp._n16-5 Bacillus sp. n16-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VMW FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vmv\|3vmv]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vmv\|3vmv]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1386~~ Bacillus])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122631 Bacillus sp. N16-5])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [http://www.ebi.ac.uk/pdbsum/3vmw PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [http://pdbe.org/3vmw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [http://www.ebi.ac.uk/pdbsum/3vmw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmw ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 3vmw" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacillus]]		[[Category: Bacillus sp. n16-5]]
	[[Category: Pectate lyase]]		[[Category: Pectate lyase]]
	[[Category: Guo, R T]]		[[Category: Guo, R T]]

OCA at 10:00, 4 January 2015

2015-01-04T10:00:34Z

← Older revision		Revision as of 10:00, 4 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus Bacillus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VMW FirstGlance]. <br>		<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus Bacillus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VMW FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vmv\|3vmv]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vmv\|3vmv]]</td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1386 Bacillus])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1386 Bacillus])</td></tr>
	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [http://www.ebi.ac.uk/pdbsum/3vmw PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [http://www.ebi.ac.uk/pdbsum/3vmw PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Bacillus]]		[[Category: Bacillus]]
	[[Category: Pectate lyase]]		[[Category: Pectate lyase]]
	[[Category: Guo, R T.]]		[[Category: Guo, R T]]
	[[Category: Huang, C H.]]		[[Category: Huang, C H]]
	[[Category: Ko, T P.]]		[[Category: Ko, T P]]
	[[Category: Liu, W.]]		[[Category: Liu, W]]
	[[Category: Ma, Y.]]		[[Category: Ma, Y]]
	[[Category: Xue, Y.]]		[[Category: Xue, Y]]
	[[Category: Zhang, G.]]		[[Category: Zhang, G]]
	[[Category: Zheng, Y.]]		[[Category: Zheng, Y]]
	[[Category: Zhou, C.]]		[[Category: Zhou, C]]
	[[Category: Beta-helix]]		[[Category: Beta-helix]]
	[[Category: Lyase]]		[[Category: Lyase]]
	~~[[Category: Pectate lyase]]~~
	[[Category: Pectolytic]]		[[Category: Pectolytic]]
	[[Category: Polygalacturonate]]		[[Category: Polygalacturonate]]
	[[Category: Polysaccharide lyase family 1]]		[[Category: Polysaccharide lyase family 1]]

OCA at 08:22, 5 June 2014

2014-06-05T08:22:01Z

← Older revision		Revision as of 08:22, 5 June 2014
Line 1:		Line 1:
	[[~~Image~~:~~3vmw~~.~~jpg~~\|~~left~~\|~~200px~~]]		==Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate==
			<StructureSection load='3vmw' size='340' side='right' caption='[[3vmw]], [[Resolution\|resolution]] 1.90Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus Bacillus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VMW FirstGlance]. <br>
			</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene><br>
			<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vmv\|3vmv]]</td></tr>
			<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1386 Bacillus])</td></tr>
			<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr>
			<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [http://www.ebi.ac.uk/pdbsum/3vmw PDBsum]</span></td></tr>
			<table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The pectate lyase (Bsp165PelA) from Bacillus sp. N16-5 has great potential in industrial applications because it shows high specific activity under extremely alkaline conditions. Besides, activity measurement of Bsp165PelA does not require addition of calcium, in a way different from the other pectate lyases. Here we report crystal structures of Bsp165PelA in apo-form and in complex with trigalacturonate. The parallel beta-helix, active site residues and substrate binding cleft are similar to those in the other pectate lyases from Polysaccharide Lyase family 1. However, some of the highly conserved Ca(2+) binding residues and secondary structures are altered in Bsp165PelA, making it difficult to coordinate with Ca(2+) as in the other pectate lyases. We found Bsp165PelA forms some direct enzyme-substrate interactions instead of using Ca(2+) ions bridging in the extremely alkaline environment.

	~~{{STRUCTURE_3vmw\| PDB=3vmw \| SCENE= }}~~		Crystal structure and substrate-binding mode of a novel pectate lyase from alkaliphilic Bacillus sp. N16-5.,Zheng Y, Huang CH, Liu W, Ko TP, Xue Y, Zhou C, Guo RT, Ma Y Biochem Biophys Res Commun. 2012 Apr 6;420(2):269-74. Epub 2012 Mar 3. PMID:22414692<ref>PMID:22414692</ref>

	~~===Crystal structure~~ of ~~pectate lyase Bsp165PelA from Bacillus sp~~. ~~N165 in complex with trigalacturonate===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_22414692}}~~		== References ==
			<references/>
	~~==About this Structure==~~		__TOC__
	~~[[3vmw]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Bacillus Bacillus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA].~~		</StructureSection>

	==~~Reference~~==
	<~~ref group="xtra">PMID:022414692<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Bacillus]]		[[Category: Bacillus]]
	[[Category: Pectate lyase]]		[[Category: Pectate lyase]]

OCA at 07:08, 25 July 2012

2012-07-25T07:08:05Z

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
+[[Image:3vmw.jpg|left|200px]]
-The entry 3vmw is ON HOLD  until Paper Publication
+{{STRUCTURE_3vmw|  PDB=3vmw  |  SCENE=  }}
-Authors: Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y.
+===Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate===
-Description: Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate
+{{ABSTRACT_PUBMED_22414692}}

OCA at 06:05, 8 February 2012

2012-02-08T06:05:59Z

← Older revision		Revision as of 06:05, 8 February 2012
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 3vmw is ON HOLD		The entry 3vmw is ON HOLD until Paper Publication

	Authors: Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y.		Authors: Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y.

	Description: Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate		Description: Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate

OCA: Protected "3vmw" [edit=sysop:move=sysop]

2011-12-28T06:57:39Z

Protected "3vmw" [edit=sysop:move=sysop]

← Older revision	Revision as of 06:57, 28 December 2011
(No difference)

OCA: New page: '''Unreleased structure''' The entry 3vmw is ON HOLD Authors: Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y. Description: Crystal structure ...

2011-12-28T06:57:39Z

New page: '''Unreleased structure''' The entry 3vmw is ON HOLD Authors: Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y. Description: Crystal structure ...

New page

'''Unreleased structure'''

The entry 3vmw is ON HOLD

Authors: Zheng, Y., Huang, C.H., Liu, W., Ko, T.P., Xue, Y., Zhou, C., Zhang, G., Guo, R.T., Ma, Y.

Description: Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate