3zig - Revision history

OCA at 10:36, 6 November 2024

2024-11-06T10:36:39Z

← Older revision		Revision as of 10:36, 6 November 2024
Line 3:		Line 3:
	<StructureSection load='3zig' size='340' side='right'caption='[[3zig]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3zig' size='340' side='right'caption='[[3zig]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3zig]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Pyrococcus_furiosus_com1~~ Pyrococcus furiosus ~~com1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZIG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZIG FirstGlance]. <br>		<table><tr><td colspan='2'>[[3zig]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_COM1 Pyrococcus furiosus COM1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZIG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZIG FirstGlance]. <br>
	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3zie\|3zie]], [[3zih\|3zih]], [[3zii\|3zii]]~~</~~div~~></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zig OCA], [https://pdbe.org/3zig PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zig RCSB], [https://www.ebi.ac.uk/pdbsum/3zig PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zig ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zig OCA], [https://pdbe.org/3zig PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zig RCSB], [https://www.ebi.ac.uk/pdbsum/3zig PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zig ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/I6V3Q6_9EURY I6V3Q6_9EURY]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Pyrococcus furiosus ~~com1~~]]		[[Category: Pyrococcus furiosus COM1]]
	[[Category: Celik, I]]		[[Category: Celik I]]
	[[Category: Duman, R]]		[[Category: Duman R]]
	[[Category: Hamoen~~, L W~~]]		[[Category: Hamoen LW]]
	[[Category: Ishikawa, S]]		[[Category: Ishikawa S]]
	[[Category: Lowe, J]]		[[Category: Lowe J]]
	[[Category: Ogasawara, N]]		[[Category: Ogasawara N]]
	~~[[Category: Cell cycle~~]]

OCA at 05:47, 10 August 2022

2022-08-10T05:47:35Z

← Older revision		Revision as of 05:47, 10 August 2022
Line 1:		Line 1:

	==SepF-like protein from Pyrococcus furiosus==		==SepF-like protein from Pyrococcus furiosus==
	<StructureSection load='3zig' size='340' side='right' caption='[[3zig]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3zig' size='340' side='right'caption='[[3zig]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3zig]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pyrococcus_furiosus_com1 Pyrococcus furiosus com1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZIG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ZIG FirstGlance]. <br>		<table><tr><td colspan='2'>[[3zig]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_com1 Pyrococcus furiosus com1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZIG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZIG FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zie\|3zie]], [[3zih\|3zih]], [[3zii\|3zii]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3zie\|3zie]], [[3zih\|3zih]], [[3zii\|3zii]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3zig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zig OCA], [~~http~~://pdbe.org/3zig PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3zig RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3zig PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3zig ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zig OCA], [https://pdbe.org/3zig PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zig RCSB], [https://www.ebi.ac.uk/pdbsum/3zig PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zig ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Pyrococcus furiosus com1]]		[[Category: Pyrococcus furiosus com1]]
	[[Category: Celik, I]]		[[Category: Celik, I]]

OCA at 03:55, 5 August 2016

2016-08-05T03:55:07Z

← Older revision		Revision as of 03:55, 5 August 2016
Line 1:		Line 1:

	==SepF-like protein from Pyrococcus furiosus==		==SepF-like protein from Pyrococcus furiosus==
	<StructureSection load='3zig' size='340' side='right' caption='[[3zig]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3zig' size='340' side='right' caption='[[3zig]], [[Resolution\|resolution]] 2.50Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zie\|3zie]], [[3zih\|3zih]], [[3zii\|3zii]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zie\|3zie]], [[3zih\|3zih]], [[3zii\|3zii]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zig OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zig RCSB], [http://www.ebi.ac.uk/pdbsum/3zig PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zig OCA], [http://pdbe.org/3zig PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zig RCSB], [http://www.ebi.ac.uk/pdbsum/3zig PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zig ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 3zig" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:43, 21 December 2014

2014-12-21T17:43:52Z

← Older revision		Revision as of 17:43, 21 December 2014
Line 1:		Line 1:
	~~{{STRUCTURE_3zig\| PDB~~=3zig \| ~~SCENE~~= }}		==SepF-like protein from Pyrococcus furiosus==
	===~~SepF-like protein~~ from Pyrococcus furiosus===		<StructureSection load='3zig' size='340' side='right' caption='[[3zig]], [[Resolution\|resolution]] 2.50Å' scene=''>
	~~{{ABSTRACT_PUBMED_24218584}}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[3zig]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_com1 Pyrococcus furiosus com1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZIG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZIG FirstGlance]. <br>
			</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zie\|3zie]], [[3zih\|3zih]], [[3zii\|3zii]]</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zig OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zig RCSB], [http://www.ebi.ac.uk/pdbsum/3zig PDBsum]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			A key step in bacterial cell division is the polymerization of the tubulin homolog FtsZ at midcell. FtsZ polymers are anchored to the cell membrane by FtsA and are required for the assembly of all other cell division proteins. In Gram-positive and cyanobacteria, FtsZ filaments are aligned by the protein SepF, which in vitro polymerizes into large rings that bundle FtsZ filaments. Here we describe the crystal structure of the only globular domain of SepF, located within the C-terminal region. Two-hybrid data revealed that this domain comprises the FtsZ binding site, and EM analyses showed that it is sufficient for ring formation, which is explained by the filaments in the crystals of SepF. Site-directed mutagenesis, gel filtration, and analytical ultracentrifugation indicated that dimers form the basic units of SepF filaments. High-resolution structured illumination microscopy suggested that SepF is membrane associated, and it turned out that purified SepF not only binds to lipid membranes, but also recruits FtsZ. Further genetic and biochemical analyses showed that an amphipathic helix at the N terminus functions as the membrane-binding domain, making SepF a unique membrane anchor for the FtsZ ring. This clarifies why Bacillus subtilis grows without FtsA or the putative membrane anchor EzrA and why bacteria lacking FtsA contain SepF homologs. Both FtsA and SepF use an amphipathic helix for membrane binding. These helices prefer positively curved membranes due to relaxed lipid density; therefore this type of membrane anchor may assist in keeping the Z ring positioned at the strongly curved leading edge of the developing septum.

	~~==About this Structure==~~		Structural and genetic analyses reveal the protein SepF as a new membrane anchor for the Z ring.,Duman R, Ishikawa S, Celik I, Strahl H, Ogasawara N, Troc P, Lowe J, Hamoen LW Proc Natl Acad Sci U S A. 2013 Nov 11. PMID:24218584<ref>PMID:24218584</ref>
	~~[[3zig]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pyrococcus_furiosus_com1 Pyrococcus furiosus com1]~~. ~~Full crystallographic information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3ZIG OCA].~~

	==~~Reference~~==		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	~~<ref group="xtra">PMID:024218584</ref>~~<references ~~group="xtra"~~/><~~references~~/>		</div>
			== References ==
			<references/>
			__TOC__
			</StructureSection>
	[[Category: Pyrococcus furiosus com1]]		[[Category: Pyrococcus furiosus com1]]
	[[Category: Celik, I.]]		[[Category: Celik, I]]
	[[Category: Duman, R.]]		[[Category: Duman, R]]
	[[Category: Hamoen, L W.]]		[[Category: Hamoen, L W]]
	[[Category: Ishikawa, S.]]		[[Category: Ishikawa, S]]
	[[Category: Lowe, J.]]		[[Category: Lowe, J]]
	[[Category: Ogasawara, N.]]		[[Category: Ogasawara, N]]
	[[Category: Cell cycle]]		[[Category: Cell cycle]]

OCA at 12:17, 11 December 2013

2013-12-11T12:17:08Z

← Older revision		Revision as of 12:17, 11 December 2013
Line 4:		Line 4:

	==About this Structure==		==About this Structure==
	[[3zig]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZIG OCA].		[[3zig]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_com1 Pyrococcus furiosus com1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZIG OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:024218584</ref><references group="xtra"/><references/>		<ref group="xtra">PMID:024218584</ref><references group="xtra"/><references/>
			[[Category: Pyrococcus furiosus com1]]
	[[Category: Celik, I.]]		[[Category: Celik, I.]]
	[[Category: Duman, R.]]		[[Category: Duman, R.]]

OCA at 10:20, 27 November 2013

2013-11-27T10:20:01Z

← Older revision		Revision as of 10:20, 27 November 2013
Line 1:		Line 1:
	~~'''Unreleased structure'''~~		{{STRUCTURE_3zig\| PDB=3zig \| SCENE= }}
			===SepF-like protein from Pyrococcus furiosus===
			{{ABSTRACT_PUBMED_24218584}}

	~~The entry~~ 3zig is ~~ON HOLD until Paper Publication~~		==About this Structure==
			[[3zig]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZIG OCA].

	~~Authors~~: Duman, R., Ishikawa, S., ~~Celik, I~~., Ogasawara, N.~~, Lowe, J., Hamoen, L.W.~~		==Reference==
			<ref group="xtra">PMID:024218584</ref><references group="xtra"/><references/>
	~~Description~~: ~~SepF-like protein from Pyrococcus furiosus~~		[[Category: Celik, I.]]
			[[Category: Duman, R.]]
			[[Category: Hamoen, L W.]]
			[[Category: Ishikawa, S.]]
			[[Category: Lowe, J.]]
			[[Category: Ogasawara, N.]]
			[[Category: Cell cycle]]

OCA at 07:34, 21 August 2013

2013-08-21T07:34:12Z

← Older revision		Revision as of 07:34, 21 August 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 3zig is ON HOLD		The entry 3zig is ON HOLD until Paper Publication

	Authors: Duman, R., Ishikawa, S., Celik, I., Ogasawara, N., Lowe, J., Hamoen, L.W.		Authors: Duman, R., Ishikawa, S., Celik, I., Ogasawara, N., Lowe, J., Hamoen, L.W.

	Description: SepF-like protein from Pyrococcus furiosus		Description: SepF-like protein from Pyrococcus furiosus

OCA: Protected "3zig" [edit=sysop:move=sysop]

2013-01-16T08:12:06Z

Protected "3zig" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:12, 16 January 2013
(No difference)

OCA: New page: '''Unreleased structure''' The entry 3zig is ON HOLD Authors: Duman, R., Ishikawa, S., Celik, I., Ogasawara, N., Lowe, J., Hamoen, L.W. Description: SepF-like protein from Pyrococcus f...

2013-01-16T08:12:05Z

New page: '''Unreleased structure''' The entry 3zig is ON HOLD Authors: Duman, R., Ishikawa, S., Celik, I., Ogasawara, N., Lowe, J., Hamoen, L.W. Description: SepF-like protein from Pyrococcus f...

New page

'''Unreleased structure'''

The entry 3zig is ON HOLD

Authors: Duman, R., Ishikawa, S., Celik, I., Ogasawara, N., Lowe, J., Hamoen, L.W.

Description: SepF-like protein from Pyrococcus furiosus