4dca - Revision history

OCA at 08:11, 21 September 2022

2022-09-21T08:11:18Z

← Older revision		Revision as of 08:11, 21 September 2022
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	==Crystal structure of aminoglycoside phosphotransferase APH(2'')-Ib, ADP-bound==		==Crystal structure of aminoglycoside phosphotransferase APH(2'')-Ib, ADP-bound==
	<StructureSection load='4dca' size='340' side='right' caption='[[4dca]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='4dca' size='340' side='right'caption='[[4dca]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4dca]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4DCA FirstGlance]. <br>		<table><tr><td colspan='2'>[[4dca]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DCA FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>~~		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dca OCA], [https://pdbe.org/4dca PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dca RCSB], [https://www.ebi.ac.uk/pdbsum/4dca PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dca ProSAT]</span></td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3uzr\|3uzr]]</td></tr>~~
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aph(2')-Ib ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4dca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dca OCA], [~~http~~://pdbe.org/4dca PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4dca RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4dca PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4dca ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[[https://www.uniprot.org/uniprot/Q93ET9_ECOLX Q93ET9_ECOLX]]

	==See Also==		==See Also==
	*[[Phosphotransferase\|Phosphotransferase]]		*[[Phosphotransferase 3D structures\|Phosphotransferase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]		[[Category: Escherichia coli]]
	[[Category: ~~Anderson, W F~~]]		[[Category: Large Structures]]
	[[Category: ~~Structural genomic~~]]		[[Category: Anderson WF]]
	[[Category: ~~Egorova, O~~]]		[[Category: Di Leo R]]
	[[Category: ~~Evdokimova, E~~]]		[[Category: Egorova O]]
	[[Category: ~~Leo, R Di~~]]		[[Category: Evdokimova E]]
	[[Category: Minasov, G]]		[[Category: Minasov G]]
	[[Category: Nocek, B]]		[[Category: Nocek B]]
	[[Category: Savchenko, A]]		[[Category: Savchenko A]]
	[[Category: Singer~~, A U~~]]		[[Category: Singer AU]]
	[[Category: Stogios~~, P J~~]]		[[Category: Stogios PJ]]
	[[Category: Tan, K]]		[[Category: Tan K]]
	~~[[Category: Aminoglycoside phosphotransferase]]~~
	~~[[Category: Aminoglycoside]]~~
	~~[[Category: Antibiotic resistance]]~~
	~~[[Category: Csgid]]~~
	~~[[Category: Eukaryotic protein kinase-like fold]]~~
	~~[[Category: Intracellular]]~~
	~~[[Category: Kinase]]~~
	~~[[Category: Transferase~~]]

OCA at 02:46, 11 December 2016

2016-12-11T02:46:00Z

← Older revision		Revision as of 02:46, 11 December 2016
Line 1:		Line 1:

	==Crystal structure of aminoglycoside phosphotransferase APH(2'')-Ib, ADP-bound==		==Crystal structure of aminoglycoside phosphotransferase APH(2'')-Ib, ADP-bound==
	<StructureSection load='4dca' size='340' side='right' caption='[[4dca]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='4dca' size='340' side='right' caption='[[4dca]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4dca]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DCA FirstGlance]. <br>		<table><tr><td colspan='2'>[[4dca]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DCA FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3uzr\|3uzr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3uzr\|3uzr]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aph(2')-Ib ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aph(2')-Ib ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dca OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4dca RCSB], [http://www.ebi.ac.uk/pdbsum/4dca PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dca OCA], [http://pdbe.org/4dca PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dca RCSB], [http://www.ebi.ac.uk/pdbsum/4dca PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dca ProSAT]</span></td></tr>
	</table>		</table>

Line 14:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Escherichia~~ coli]]		[[Category: Bacillus coli migula 1895]]
	[[Category: Anderson, W F]]		[[Category: Anderson, W F]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 17:31, 9 December 2014

2014-12-09T17:31:53Z

← Older revision		Revision as of 17:31, 9 December 2014
Line 1:		Line 1:
	~~[[Image:4dca.png\|left\|200px]]~~		==Crystal structure of aminoglycoside phosphotransferase APH(2'')-Ib, ADP-bound==
			<StructureSection load='4dca' size='340' side='right' caption='[[4dca]], [[Resolution\|resolution]] 1.80Å' scene=''>
	~~{{STRUCTURE_4dca\| PDB=4dca \| SCENE= }}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[4dca]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DCA FirstGlance]. <br>
	===Crystal structure of aminoglycoside phosphotransferase APH(2'')-Ib, ADP-bound===		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
			<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3uzr\|3uzr]]</td></tr>
	==~~About this Structure~~==		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aph(2')-Ib ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
	[[4dca]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA].		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dca OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4dca RCSB], [http://www.ebi.ac.uk/pdbsum/4dca PDBsum]</span></td></tr>
			</table>

	==See Also==		==See Also==
	*[[Phosphotransferase\|Phosphotransferase]]		*[[Phosphotransferase\|Phosphotransferase]]
			__TOC__
			</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Anderson, W F.]]		[[Category: Anderson, W F]]
	[[Category: ~~CSGID, Center for~~ Structural ~~Genomics of Infectious Diseases.~~]]		[[Category: Structural genomic]]
	[[Category: Egorova, O.]]		[[Category: Egorova, O]]
	[[Category: Evdokimova, E.]]		[[Category: Evdokimova, E]]
	[[Category: Leo, R Di.]]		[[Category: Leo, R Di]]
	[[Category: Minasov, G.]]		[[Category: Minasov, G]]
	[[Category: Nocek, B.]]		[[Category: Nocek, B]]
	[[Category: Savchenko, A.]]		[[Category: Savchenko, A]]
	[[Category: Singer, A U.]]		[[Category: Singer, A U]]
	[[Category: Stogios, P J.]]		[[Category: Stogios, P J]]
	[[Category: Tan, K.]]		[[Category: Tan, K]]
	[[Category: Aminoglycoside phosphotransferase]]		[[Category: Aminoglycoside phosphotransferase]]
	[[Category: Aminoglycoside]]		[[Category: Aminoglycoside]]
	[[Category: Antibiotic resistance]]		[[Category: Antibiotic resistance]]
	~~[[Category: Center for structural genomics of infectious disease]]~~
	[[Category: Csgid]]		[[Category: Csgid]]
	[[Category: Eukaryotic protein kinase-like fold]]		[[Category: Eukaryotic protein kinase-like fold]]
	[[Category: Intracellular]]		[[Category: Intracellular]]
	[[Category: Kinase]]		[[Category: Kinase]]
	~~[[Category: Structural genomic]]~~
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 12:43, 20 October 2012

2012-10-20T12:43:20Z

← Older revision		Revision as of 12:43, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
	[[4dca]] is a 1 chain structure ~~of [[Phosphotransferase]]~~ with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA].		[[4dca]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA].

	==See Also==		==See Also==

OCA at 09:39, 26 July 2012

2012-07-26T09:39:18Z

← Older revision		Revision as of 09:39, 26 July 2012
Line 1:		Line 1:
	[[Image:4dca.~~jpg~~\|left\|200px]]		[[Image:4dca.png\|left\|200px]]

	~~<!--~~
	~~The line below this paragraph, containing "STRUCTURE_4dca", creates the "Structure Box" on the page.~~
	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~
	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~
	~~or leave the SCENE parameter empty for the default display.~~
	~~-->~~
	{{STRUCTURE_4dca\| PDB=4dca \| SCENE= }}		{{STRUCTURE_4dca\| PDB=4dca \| SCENE= }}

Line 13:		Line 7:

	==About this Structure==		==About this Structure==
	[[4dca]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA].		[[4dca]] is a 1 chain structure of [[Phosphotransferase]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r70 3r70]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCA OCA].

			==See Also==
			*[[Phosphotransferase\|Phosphotransferase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Anderson, W F.]]		[[Category: Anderson, W F.]]

OCA at 07:14, 1 February 2012

2012-02-01T07:14:35Z

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
+[[Image:4dca.jpg|left|200px]]
-The entry 4dca is ON HOLD
+<!--
-Authors: Stogios, P.J., Minasov, G., Singer, A.U., Tan, K., Nocek, B., Evdokimova, E., Egorova, O., Di Leo, R., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
+===Crystal structure of aminoglycoside phosphotransferase APH(2'')-Ib, ADP-bound===
-Description: Crystal structure of aminoglycoside phosphotransferase APH(2'')-Ib, ADP-bound

OCA: Protected "4dca" [edit=sysop:move=sysop]

2012-01-25T06:11:26Z

Protected "4dca" [edit=sysop:move=sysop]

← Older revision	Revision as of 06:11, 25 January 2012
(No difference)

OCA: New page: '''Unreleased structure''' The entry 4dca is ON HOLD Authors: Stogios, P.J., Minasov, G., Singer, A.U., Tan, K., Nocek, B., Evdokimova, E., Egorova, O., Di Leo, R., Savchenko, A., Ander...

2012-01-25T06:11:25Z

New page: '''Unreleased structure''' The entry 4dca is ON HOLD Authors: Stogios, P.J., Minasov, G., Singer, A.U., Tan, K., Nocek, B., Evdokimova, E., Egorova, O., Di Leo, R., Savchenko, A., Ander...

New page

'''Unreleased structure'''

The entry 4dca is ON HOLD

Authors: Stogios, P.J., Minasov, G., Singer, A.U., Tan, K., Nocek, B., Evdokimova, E., Egorova, O., Di Leo, R., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Description: Crystal structure of aminoglycoside phosphotransferase APH(2'')-Ib, ADP-bound