4eo0 - Revision history

OCA at 02:50, 21 November 2024

2024-11-21T02:50:37Z

← Older revision		Revision as of 02:50, 21 November 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4eo0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_phage_IKe Salmonella phage IKe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EO0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4EO0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4eo0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_phage_IKe Salmonella phage IKe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EO0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4EO0 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4eo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eo0 OCA], [https://pdbe.org/4eo0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4eo0 RCSB], [https://www.ebi.ac.uk/pdbsum/4eo0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4eo0 ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.61Å</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4eo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eo0 OCA], [https://pdbe.org/4eo0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4eo0 RCSB], [https://www.ebi.ac.uk/pdbsum/4eo0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4eo0 ProSAT]</span></td></tr>
	</table>		</table>
	~~== Function ==~~
	[[https://www.uniprot.org/uniprot/G3P_BPIKE G3P_BPIKE]] Plays essential roles both in the penetration of the viral genome into the bacterial host via pilus retraction and in the extrusion process. During the initial step of infection, G3P mediates adsorption of the phage to its primary receptor, the tip of host F-pilus. Subsequent interaction with the host entry receptor tolA induces penetration of the viral DNA into the host cytoplasm. In the extrusion process, G3P mediates the release of the membrane-anchored virion from the cell via its C-terminal domain (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	==See Also==		==See Also==
	*[[G3p\|G3p]]		*[[G3p\|G3p]]
			*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:20, 28 September 2022

2022-09-28T07:20:06Z

← Older revision		Revision as of 07:20, 28 September 2022
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	==crystal structure of the pilus binding domain of the filamentous phage IKe==		==crystal structure of the pilus binding domain of the filamentous phage IKe==
	<StructureSection load='4eo0' size='340' side='right' caption='[[4eo0]], [[Resolution\|resolution]] 1.61Å' scene=''>		<StructureSection load='4eo0' size='340' side='right'caption='[[4eo0]], [[Resolution\|resolution]] 1.61Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4eo0]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bpike Bpike~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EO0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4EO0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4eo0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_phage_IKe Salmonella phage IKe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EO0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4EO0 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dgs\|3dgs]], [[1g3p\|1g3p]], [[1tol\|1tol]], [[3knq\|3knq]], [[2x9a\|2x9a]], [[2x9b\|2x9b]], [[1fgp\|1fgp]], [[4eo1\|4eo1]]</td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4eo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eo0 OCA], [https://pdbe.org/4eo0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4eo0 RCSB], [https://www.ebi.ac.uk/pdbsum/4eo0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4eo0 ProSAT]</span></td></tr>
	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">III ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10867 BPIKE])</td></tr>~~
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4eo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eo0 OCA], [~~http~~://pdbe.org/4eo0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4eo0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4eo0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4eo0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[~~http~~://www.uniprot.org/uniprot/G3P_BPIKE G3P_BPIKE]] Plays essential roles both in the penetration of the viral genome into the bacterial host via pilus retraction and in the extrusion process. During the initial step of infection, G3P mediates adsorption of the phage to its primary receptor, the tip of host F-pilus. Subsequent interaction with the host entry receptor tolA induces penetration of the viral DNA into the host cytoplasm. In the extrusion process, G3P mediates the release of the membrane-anchored virion from the cell via its C-terminal domain (By similarity).		[[https://www.uniprot.org/uniprot/G3P_BPIKE G3P_BPIKE]] Plays essential roles both in the penetration of the viral genome into the bacterial host via pilus retraction and in the extrusion process. During the initial step of infection, G3P mediates adsorption of the phage to its primary receptor, the tip of host F-pilus. Subsequent interaction with the host entry receptor tolA induces penetration of the viral DNA into the host cytoplasm. In the extrusion process, G3P mediates the release of the membrane-anchored virion from the cell via its C-terminal domain (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 4eo0" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4eo0" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[G3p\|G3p]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Bpike~~]]		[[Category: Large Structures]]
	[[Category: Balbach, J]]		[[Category: Salmonella phage IKe]]
	[[Category: Dobbek, H]]		[[Category: Balbach J]]
	[[Category: Geitner~~, A J~~]]		[[Category: Dobbek H]]
	[[Category: Jakob~~, R P~~]]		[[Category: Geitner AJ]]
	[[Category: Schmid~~, F X~~]]		[[Category: Jakob RP]]
	[[Category: Weininger, U]]		[[Category: Schmid FX]]
	~~[[Category: At the tip of filamentous phage ike]]~~		[[Category: Weininger U]]
	~~[[Category: Filamentuos phage]]~~
	~~[[Category: G3p]]~~
	~~[[Category: Gene-3-protein]]~~
	~~[[Category: Infection]]~~
	~~[[Category: N-pilus]]~~
	~~[[Category: Pilus binding]]~~
	~~[[Category: Receptor binding]]~~
	~~[[Category: Viral protein~~]]

OCA at 09:44, 25 October 2017

2017-10-25T09:44:19Z

← Older revision		Revision as of 09:44, 25 October 2017
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	</div>		</div>
	<div class="pdbe-citations 4eo0" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4eo0" style="background-color:#fffaf0;"></div>

	~~==See Also==~~
	*[[G3p\|G3p]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:04, 4 August 2016

2016-08-04T14:04:21Z

← Older revision		Revision as of 14:04, 4 August 2016
Line 1:		Line 1:

	==crystal structure of the pilus binding domain of the filamentous phage IKe==		==crystal structure of the pilus binding domain of the filamentous phage IKe==
	<StructureSection load='4eo0' size='340' side='right' caption='[[4eo0]], [[Resolution\|resolution]] 1.61Å' scene=''>		<StructureSection load='4eo0' size='340' side='right' caption='[[4eo0]], [[Resolution\|resolution]] 1.61Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4eo0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_ike Enterobacteria phage ike~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EO0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4EO0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4eo0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpike Bpike]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EO0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4EO0 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dgs\|3dgs]], [[1g3p\|1g3p]], [[1tol\|1tol]], [[3knq\|3knq]], [[2x9a\|2x9a]], [[2x9b\|2x9b]], [[1fgp\|1fgp]], [[4eo1\|4eo1]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dgs\|3dgs]], [[1g3p\|1g3p]], [[1tol\|1tol]], [[3knq\|3knq]], [[2x9a\|2x9a]], [[2x9b\|2x9b]], [[1fgp\|1fgp]], [[4eo1\|4eo1]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">III ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10867 ~~Enterobacteria phage Ike~~])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">III ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10867 BPIKE])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4eo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eo0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4eo0 RCSB], [http://www.ebi.ac.uk/pdbsum/4eo0 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4eo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eo0 OCA], [http://pdbe.org/4eo0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4eo0 RCSB], [http://www.ebi.ac.uk/pdbsum/4eo0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4eo0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 4eo0" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 24:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Enterobacteria phage ike~~]]		[[Category: Bpike]]
	[[Category: Balbach, J]]		[[Category: Balbach, J]]
	[[Category: Dobbek, H]]		[[Category: Dobbek, H]]

OCA at 09:59, 25 December 2014

2014-12-25T09:59:00Z

← Older revision		Revision as of 09:59, 25 December 2014
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4eo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eo0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4eo0 RCSB], [http://www.ebi.ac.uk/pdbsum/4eo0 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4eo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eo0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4eo0 RCSB], [http://www.ebi.ac.uk/pdbsum/4eo0 PDBsum]</span></td></tr>
	</table>		</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/G3P_BPIKE G3P_BPIKE]] Plays essential roles both in the penetration of the viral genome into the bacterial host via pilus retraction and in the extrusion process. During the initial step of infection, G3P mediates adsorption of the phage to its primary receptor, the tip of host F-pilus. Subsequent interaction with the host entry receptor tolA induces penetration of the viral DNA into the host cytoplasm. In the extrusion process, G3P mediates the release of the membrane-anchored virion from the cell via its C-terminal domain (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 17:21, 9 December 2014

2014-12-09T17:21:14Z

← Older revision		Revision as of 17:21, 9 December 2014
Line 1:		Line 1:
	[[~~Image~~:~~4eo0~~.~~png~~\|~~left~~\|~~200px~~]]		==crystal structure of the pilus binding domain of the filamentous phage IKe==
			<StructureSection load='4eo0' size='340' side='right' caption='[[4eo0]], [[Resolution\|resolution]] 1.61Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[4eo0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_ike Enterobacteria phage ike]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EO0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4EO0 FirstGlance]. <br>
			</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dgs\|3dgs]], [[1g3p\|1g3p]], [[1tol\|1tol]], [[3knq\|3knq]], [[2x9a\|2x9a]], [[2x9b\|2x9b]], [[1fgp\|1fgp]], [[4eo1\|4eo1]]</td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">III ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10867 Enterobacteria phage Ike])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4eo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4eo0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4eo0 RCSB], [http://www.ebi.ac.uk/pdbsum/4eo0 PDBsum]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Filamentous phage use the two N-terminal domains of their gene-3-proteins to initiate infection of Escherichia coli. One domain interacts with a pilus, and then the other domain binds to TolA at the cell surface. In phage fd, these two domains are tightly associated with each other, which renders the phage robust but non-infectious, because the TolA binding site is inaccessible. Activation for infection requires partial unfolding, domain disassembly and prolyl isomerization. Phage IKe infects E. coli less efficiently than phage fd. Unlike in phage fd, the pilus- and TolA-binding domains of phage IKe are independent of each other in stability and folding. The site for TolA binding is thus always accessible, but the affinity is very low. The structures of the two domains, analysed by X-ray crystallography and by NMR spectroscopy, revealed a unique fold for the N-pilus-binding domain and a conserved fold for the TolA-binding domain. The absence of an activation mechanism as in phage fd and the low affinity for TolA probably explain the low infectivity of phage IKe. They also explain why, in a previous co-evolution experiment with a mixture of phage fd and phage IKe, all hybrid phage adopted the superior infection mechanism of phage fd.

	~~{{STRUCTURE_4eo0\| PDB=4eo0 \| SCENE= }}~~		Structural and energetic basis of infection by the filamentous bacteriophage IKe.,Jakob RP, Geitner AJ, Weininger U, Balbach J, Dobbek H, Schmid FX Mol Microbiol. 2012 May 17. doi: 10.1111/j.1365-2958.2012.08079.x. PMID:22591114<ref>PMID:22591114</ref>

	~~===crystal structure~~ of the ~~pilus binding domain~~ of ~~the filamentous phage IKe===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>

	~~{{ABSTRACT_PUBMED_22591114}}~~		==See Also==
			*[[G3p\|G3p]]
	==~~About this Structure~~==		== References ==
	[[~~4eo0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_ike Enterobacteria phage ike~~]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EO0 OCA~~].		<references/>
			__TOC__
	==~~Reference~~==		</StructureSection>
	<~~ref group="xtra">PMID:022591114<~~/~~ref~~><~~references group="xtra"~~/>
	[[Category: Enterobacteria phage ike]]		[[Category: Enterobacteria phage ike]]
	[[Category: Balbach, J.]]		[[Category: Balbach, J]]
	[[Category: Dobbek, H.]]		[[Category: Dobbek, H]]
	[[Category: Geitner, A J.]]		[[Category: Geitner, A J]]
	[[Category: Jakob, R P.]]		[[Category: Jakob, R P]]
	[[Category: Schmid, F X.]]		[[Category: Schmid, F X]]
	[[Category: Weininger, U.]]		[[Category: Weininger, U]]
	[[Category: At the tip of filamentous phage ike]]		[[Category: At the tip of filamentous phage ike]]
	[[Category: Filamentuos phage]]		[[Category: Filamentuos phage]]

OCA at 08:29, 9 January 2013

2013-01-09T08:29:55Z

← Older revision		Revision as of 08:29, 9 January 2013
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	[[Image:4eo0.~~jpg~~\|left\|200px]]		[[Image:4eo0.png\|left\|200px]]

	~~<!--~~
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	~~or leave the SCENE parameter empty for the default display.~~
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	{{STRUCTURE_4eo0\| PDB=4eo0 \| SCENE= }}		{{STRUCTURE_4eo0\| PDB=4eo0 \| SCENE= }}

	===crystal structure of the pilus binding domain of the filamentous phage IKe===		===crystal structure of the pilus binding domain of the filamentous phage IKe===


	~~<!--~~
	~~The line below this paragraph, {{ABSTRACT_PUBMED_22591114}}, adds the Publication Abstract to the page~~
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	{{ABSTRACT_PUBMED_22591114}}		{{ABSTRACT_PUBMED_22591114}}

OCA at 05:53, 30 May 2012

2012-05-30T05:53:22Z

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
+[[Image:4eo0.jpg|left|200px]]
-The entry 4eo0 is ON HOLD
+<!--
-Authors: Jakob, R.P., Geitner, A.J., Weininger, U., Balbach, J., Dobbek, H., Schmid, F.X.
+===crystal structure of the pilus binding domain of the filamentous phage IKe===
-Description: crystal structure of the pilus binding domain of the filamentous phage IKe

OCA at 05:38, 23 May 2012

2012-05-23T05:38:01Z

← Older revision		Revision as of 05:38, 23 May 2012
Line 3:		Line 3:
	The entry 4eo0 is ON HOLD		The entry 4eo0 is ON HOLD

	Authors: Jakob, R.P., Geitner; A.J., Weininger, U., Balbach, J., Dobbek, H., Schmid, F.X.		Authors: Jakob, R.P., Geitner, A.J., Weininger, U., Balbach, J., Dobbek, H., Schmid, F.X.

	Description: crystal structure of the pilus binding domain of the filamentous phage IKe		Description: crystal structure of the pilus binding domain of the filamentous phage IKe

OCA: Protected "4eo0" [edit=sysop:move=sysop]

2012-04-25T08:55:05Z

Protected "4eo0" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:55, 25 April 2012
(No difference)