4inx - Revision history

OCA at 10:07, 30 October 2024

2024-10-30T10:07:11Z

← Older revision		Revision as of 10:07, 30 October 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4inx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Amyelois_transitella Amyelois transitella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4INX FirstGlance]. <br>		<table><tr><td colspan='2'>[[4inx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Amyelois_transitella Amyelois transitella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4INX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1EX:(11Z,13Z)-HEXADECA-11,13-DIEN-1-OL'>1EX</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.853Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1EX:(11Z,13Z)-HEXADECA-11,13-DIEN-1-OL'>1EX</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4inx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4inx OCA], [https://pdbe.org/4inx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4inx RCSB], [https://www.ebi.ac.uk/pdbsum/4inx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4inx ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4inx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4inx OCA], [https://pdbe.org/4inx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4inx RCSB], [https://www.ebi.ac.uk/pdbsum/4inx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4inx ProSAT]</span></td></tr>
	</table>		</table>

OCA at 20:59, 16 November 2022

2022-11-16T20:59:57Z

← Older revision		Revision as of 20:59, 16 November 2022
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	<StructureSection load='4inx' size='340' side='right'caption='[[4inx]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='4inx' size='340' side='right'caption='[[4inx]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4inx]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Amytr Amytr~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4INX FirstGlance]. <br>		<table><tr><td colspan='2'>[[4inx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Amyelois_transitella Amyelois transitella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4INX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1EX:(11Z,13Z)-HEXADECA-11,13-DIEN-1-OL'>1EX</scene>~~</td></tr>~~		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1EX:(11Z,13Z)-HEXADECA-11,13-DIEN-1-OL'>1EX</scene></td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4inw\|4inw]]~~</td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4inx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4inx OCA], [https://pdbe.org/4inx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4inx RCSB], [https://www.ebi.ac.uk/pdbsum/4inx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4inx ProSAT]</span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4inx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4inx OCA], [~~http~~://pdbe.org/4inx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4inx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4inx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4inx ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/D0E9M1_AMYTR D0E9M1_AMYTR]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Amytr~~]]		[[Category: Amyelois transitella]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: Luccio, E di]]~~		[[Category: Wilson DK]]
	[[Category: Wilson~~, D K~~]]		[[Category: Di Luccio E]]
	[[Category: ~~Amyelois transitella]]~~
	~~[[Category: Atrapbp1]]~~
	~~[[Category: Navel orangeworm moth]]~~
	~~[[Category: Ph-dependent binding]]~~
	~~[[Category: Pheromone]]~~
	~~[[Category: Pheromone-binding protein~~]]

OCA at 07:33, 27 March 2019

2019-03-27T07:33:21Z

← Older revision		Revision as of 07:33, 27 March 2019
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	==Structure of Pheromone-binding protein 1 in complex with (Z,Z)-11,13- hexadecadienol==		==Structure of Pheromone-binding protein 1 in complex with (Z,Z)-11,13- hexadecadienol==
	<StructureSection load='4inx' size='340' side='right' caption='[[4inx]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='4inx' size='340' side='right'caption='[[4inx]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4inx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amytr Amytr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4INX FirstGlance]. <br>		<table><tr><td colspan='2'>[[4inx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amytr Amytr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4INX FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Amytr]]		[[Category: Amytr]]
			[[Category: Large Structures]]
	[[Category: Luccio, E di]]		[[Category: Luccio, E di]]
	[[Category: Wilson, D K]]		[[Category: Wilson, D K]]

OCA at 07:21, 23 December 2016

2016-12-23T07:21:18Z

← Older revision		Revision as of 07:21, 23 December 2016
Line 1:		Line 1:

	==Structure of Pheromone-binding protein 1 in complex with (Z,Z)-11,13- hexadecadienol==		==Structure of Pheromone-binding protein 1 in complex with (Z,Z)-11,13- hexadecadienol==
	<StructureSection load='4inx' size='340' side='right' caption='[[4inx]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='4inx' size='340' side='right' caption='[[4inx]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4inx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Amyelois_transitella Amyelois transitella~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4INX FirstGlance]. <br>		<table><tr><td colspan='2'>[[4inx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amytr Amytr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4INX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1EX:(11Z,13Z)-HEXADECA-11,13-DIEN-1-OL'>1EX</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1EX:(11Z,13Z)-HEXADECA-11,13-DIEN-1-OL'>1EX</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4inw\|4inw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4inw\|4inw]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4inx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4inx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4inx RCSB], [http://www.ebi.ac.uk/pdbsum/4inx PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4inx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4inx OCA], [http://pdbe.org/4inx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4inx RCSB], [http://www.ebi.ac.uk/pdbsum/4inx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4inx ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 4inx" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Pheromone binding protein\|Pheromone binding protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Amyelois transitella~~]]		[[Category: Amytr]]
	[[Category: Luccio, E di]]		[[Category: Luccio, E di]]
	[[Category: Wilson, D K]]		[[Category: Wilson, D K]]
			[[Category: Amyelois transitella]]
	[[Category: Atrapbp1]]		[[Category: Atrapbp1]]
	[[Category: Navel orangeworm moth]]		[[Category: Navel orangeworm moth]]

OCA at 16:56, 10 December 2014

2014-12-10T16:56:12Z

← Older revision		Revision as of 16:56, 10 December 2014
Line 1:		Line 1:
	[[~~Image~~:~~4inx~~.~~jpg~~\|~~left~~\|~~200px~~]]		==Structure of Pheromone-binding protein 1 in complex with (Z,Z)-11,13- hexadecadienol==
			<StructureSection load='4inx' size='340' side='right' caption='[[4inx]], [[Resolution\|resolution]] 1.85Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[4inx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amyelois_transitella Amyelois transitella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4INX FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1EX:(11Z,13Z)-HEXADECA-11,13-DIEN-1-OL'>1EX</scene></td></tr>
			<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4inw\|4inw]]</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4inx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4inx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4inx RCSB], [http://www.ebi.ac.uk/pdbsum/4inx PDBsum]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The navel orangeworm, Amyelois transitella is a major agricultural pest causing large losses in a variety of tree crops. Control of this insect pest may be achieved by interfering with olfactory pathways to block detection of female-produced sex pheromones and consequently, disrupt mating. The first component of this pathway is the pheromone-binding protein AtraPBP1, which recognizes the pheromone and presents it to the odorant receptor housed in a sensory neuron of the male antennae. Release of the ligand depends on a pH-induced conformational change associated with the acidity of the membrane surface. To characterize this conformational change and to understand how pheromones bind, we have determined the high resolution crystal structures of AtraPBP1 in complex with two main constituents of the sex pheromone, i.e., (11Z,13Z)-hexadecadienal and (11Z,13Z)-hexadecadienol. Comparison with the structure of the unliganded form demonstrates a large approximately 90 degrees movement of the C-terminal helix which is observed in other pheromone- or odorant-binding proteins accompanied by an unpredicted 37 degrees displacement of the N-terminal helix. Molecular dynamic trajectories suggest that the conformational change of the alpha1 helix facilitates the movement of the C-terminal helix.

	~~{{STRUCTURE_4inx\| PDB=4inx \| SCENE= }}~~		Crystallographic Observation of pH-Induced Conformational Changes in the Amyelois transitella Pheromone-Binding Protein AtraPBP1.,di Luccio E, Ishida Y, Leal WS, Wilson DK PLoS One. 2013;8(2):e53840. doi: 10.1371/journal.pone.0053840. Epub 2013 Feb 13. PMID:23418423<ref>PMID:23418423</ref>

	~~===Structure~~ of ~~Pheromone-binding protein 1 in complex with (Z,Z)-11,13- hexadecadienol===~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~{{ABSTRACT_PUBMED_23418423}}~~		== References ==
			<references/>
	==~~About this Structure~~==		__TOC__
	[[4inx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amyelois_transitella Amyelois transitella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/~~oca-bin/ocashort?id=4INX OCA].~~		</StructureSection>
	~~[[Category: Amyelois transitella]]~~
	~~[[Category: Luccio, E di.]]~~
	~~[[Category: Wilson, D K.]]~~
	[[Category: Amyelois transitella]]		[[Category: Amyelois transitella]]
			[[Category: Luccio, E di]]
			[[Category: Wilson, D K]]
	[[Category: Atrapbp1]]		[[Category: Atrapbp1]]
	[[Category: Navel orangeworm moth]]		[[Category: Navel orangeworm moth]]

OCA at 14:16, 6 March 2013

2013-03-06T14:16:51Z

← Older revision		Revision as of 14:16, 6 March 2013
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	~~'''Unreleased structure'''~~		[[Image:4inx.jpg\|left\|200px]]

	~~The entry~~ 4inx ~~is ON HOLD~~		{{STRUCTURE_4inx\| PDB=4inx \| SCENE= }}

	~~Authors: di Luccio~~, E., ~~Wilson, D.K.~~		===Structure of Pheromone-binding protein 1 in complex with (Z,Z)-11,13- hexadecadienol===

	~~Description~~:		{{ABSTRACT_PUBMED_23418423}}

			==About this Structure==
			[[4inx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amyelois_transitella Amyelois transitella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4INX OCA].
			[[Category: Amyelois transitella]]
			[[Category: Luccio, E di.]]
			[[Category: Wilson, D K.]]
			[[Category: Amyelois transitella]]
			[[Category: Atrapbp1]]
			[[Category: Navel orangeworm moth]]
			[[Category: Ph-dependent binding]]
			[[Category: Pheromone]]
			[[Category: Pheromone-binding protein]]

OCA: Protected "4inx" [edit=sysop:move=sysop]

2013-01-16T08:27:10Z

Protected "4inx" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:27, 16 January 2013
(No difference)

OCA: New page: '''Unreleased structure''' The entry 4inx is ON HOLD Authors: di Luccio, E., Wilson, D.K. Description:

2013-01-16T08:27:09Z

New page: '''Unreleased structure''' The entry 4inx is ON HOLD Authors: di Luccio, E., Wilson, D.K. Description:

New page

'''Unreleased structure'''

The entry 4inx is ON HOLD

Authors: di Luccio, E., Wilson, D.K.

Description: