4ipe - Revision history

OCA at 07:03, 27 November 2024

2024-11-27T07:03:38Z

← Older revision		Revision as of 07:03, 27 November 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ipe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IPE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IPE FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ipe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IPE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IPE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.289Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ipe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ipe OCA], [https://pdbe.org/4ipe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ipe RCSB], [https://www.ebi.ac.uk/pdbsum/4ipe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ipe ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ipe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ipe OCA], [https://pdbe.org/4ipe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ipe RCSB], [https://www.ebi.ac.uk/pdbsum/4ipe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ipe ProSAT]</span></td></tr>
	</table>		</table>

OCA at 21:02, 16 November 2022

2022-11-16T21:02:11Z

← Older revision		Revision as of 21:02, 16 November 2022
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	==Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP==		==Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP==
	<StructureSection load='4ipe' size='340' side='right' caption='[[4ipe]], [[Resolution\|resolution]] 2.29Å' scene=''>		<StructureSection load='4ipe' size='340' side='right'caption='[[4ipe]], [[Resolution\|resolution]] 2.29Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ipe]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Brachidanio_rerio Brachidanio~~ rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IPE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4IPE FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ipe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IPE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IPE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>~~		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trap1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])~~</td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ipe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ipe OCA], [https://pdbe.org/4ipe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ipe RCSB], [https://www.ebi.ac.uk/pdbsum/4ipe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ipe ProSAT]</span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ipe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ipe OCA], [~~http~~://pdbe.org/4ipe PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ipe RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ipe PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ipe ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/A8WFV1_DANRE A8WFV1_DANRE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Brachidanio~~ rerio]]		[[Category: Danio rerio]]
	[[Category: ~~Agard, D A~~]]		[[Category: Large Structures]]
	[[Category: ~~Lavery, L A~~]]		[[Category: Agard DA]]
	[[Category: ~~Partridge, J R~~]]		[[Category: Lavery LA]]
	[[Category: ~~Atp binding]]~~		[[Category: Partridge JR]]
	~~[[Category: Atpase]]~~
	~~[[Category: Chaperone]]~~
	~~[[Category: Mitochondria~~]]

OCA at 08:14, 11 August 2016

2016-08-11T08:14:59Z

← Older revision		Revision as of 08:14, 11 August 2016
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	==Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP==		==Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP==
	<StructureSection load='4ipe' size='340' side='right' caption='[[4ipe]], [[Resolution\|resolution]] 2.29Å' scene=''>		<StructureSection load='4ipe' size='340' side='right' caption='[[4ipe]], [[Resolution\|resolution]] 2.29Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trap1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trap1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ipe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ipe OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ipe RCSB], [http://www.ebi.ac.uk/pdbsum/4ipe PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ipe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ipe OCA], [http://pdbe.org/4ipe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ipe RCSB], [http://www.ebi.ac.uk/pdbsum/4ipe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ipe ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 4ipe" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:18, 5 January 2015

2015-01-05T14:18:37Z

← Older revision		Revision as of 14:18, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ipe]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IPE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IPE FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ipe]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IPE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IPE FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trap1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">trap1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ipe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ipe OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ipe RCSB], [http://www.ebi.ac.uk/pdbsum/4ipe PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ipe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ipe OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ipe RCSB], [http://www.ebi.ac.uk/pdbsum/4ipe PDBsum]</span></td></tr>
	<table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Brachidanio rerio]]		[[Category: Brachidanio rerio]]
	[[Category: Agard, D A.]]		[[Category: Agard, D A]]
	[[Category: Lavery, L A.]]		[[Category: Lavery, L A]]
	[[Category: Partridge, J R.]]		[[Category: Partridge, J R]]
	[[Category: Atp binding]]		[[Category: Atp binding]]
	[[Category: Atpase]]		[[Category: Atpase]]
	[[Category: Chaperone]]		[[Category: Chaperone]]
	[[Category: Mitochondria]]		[[Category: Mitochondria]]

OCA at 05:44, 27 August 2014

2014-08-27T05:44:38Z

@@ Line 1: / Line 1: @@
-{{STRUCTURE_4ipe|  PDB=4ipe  |  SCENE=  }}
+==Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP==
-===Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP===
+<StructureSection load='4ipe' size='340' side='right' caption='[[4ipe]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
-==About this Structure==
+Structural asymmetry in the closed state of mitochondrial Hsp90 (TRAP1) supports a two-step ATP hydrolysis mechanism.,Lavery LA, Partridge JR, Ramelot TA, Elnatan D, Kennedy MA, Agard DA Mol Cell. 2014 Jan 23;53(2):330-43. doi: 10.1016/j.molcel.2013.12.023. PMID:24462206<ref>PMID:24462206</ref>
-[[4ipe]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IPE OCA].
 [[Category: Agard, D A.]]
 [[Category: Lavery, L A.]]

OCA at 07:02, 22 January 2014

2014-01-22T07:02:18Z

← Older revision		Revision as of 07:02, 22 January 2014
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	~~'''Unreleased~~ structure~~'''~~		{{STRUCTURE_4ipe\| PDB=4ipe \| SCENE= }}
			===Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP===

	~~The entry~~ 4ipe is ~~ON HOLD until Paper Publication~~		==About this Structure==
			[[4ipe]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IPE OCA].
	~~Authors~~: ~~Partridge~~, J.~~R.,~~ Lavery, L.A., ~~Agard, D.A~~.		[[Category: Agard, D A.]]
			[[Category: Lavery, L A.]]
	~~Description~~: ~~Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP~~		[[Category: Partridge, J R.]]
			[[Category: Atp binding]]
			[[Category: Atpase]]
			[[Category: Chaperone]]
			[[Category: Mitochondria]]

OCA at 13:25, 20 February 2013

2013-02-20T13:25:20Z

← Older revision		Revision as of 13:25, 20 February 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 4ipe is ON HOLD		The entry 4ipe is ON HOLD until Paper Publication

	Authors: Partridge, J.R., Lavery, L.A., Agard, D.A.		Authors: Partridge, J.R., Lavery, L.A., Agard, D.A.

	Description: Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP		Description: Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP

OCA: Protected "4ipe" [edit=sysop:move=sysop]

2013-01-16T08:28:53Z

Protected "4ipe" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:28, 16 January 2013
(No difference)

OCA: New page: '''Unreleased structure''' The entry 4ipe is ON HOLD Authors: Partridge, J.R., Lavery, L.A., Agard, D.A. Description: Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP

2013-01-16T08:28:52Z

New page: '''Unreleased structure''' The entry 4ipe is ON HOLD Authors: Partridge, J.R., Lavery, L.A., Agard, D.A. Description: Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP

New page

'''Unreleased structure'''

The entry 4ipe is ON HOLD

Authors: Partridge, J.R., Lavery, L.A., Agard, D.A.

Description: Crystal structure of mitochondrial Hsp90 (TRAP1) with AMPPNP