4jer - Revision history

OCA at 15:41, 20 September 2023

2023-09-20T15:41:17Z

← Older revision		Revision as of 15:41, 20 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4jer]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JER FirstGlance]. <br>		<table><tr><td colspan='2'>[[4jer]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JER FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.1Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jer OCA], [https://pdbe.org/4jer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jer RCSB], [https://www.ebi.ac.uk/pdbsum/4jer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jer ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jer OCA], [https://pdbe.org/4jer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jer RCSB], [https://www.ebi.ac.uk/pdbsum/4jer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jer ProSAT]</span></td></tr>
	</table>		</table>

OCA at 11:09, 24 November 2022

2022-11-24T11:09:57Z

← Older revision		Revision as of 11:09, 24 November 2022
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	==1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)==		==1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)==
	<StructureSection load='4jer' size='340' side='right' caption='[[4jer]], [[Resolution\|resolution]] 1.10Å' scene=''>		<StructureSection load='4jer' size='340' side='right'caption='[[4jer]], [[Resolution\|resolution]] 1.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4jer]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_pestis"_(lehmann_and_neumann_1896)_migula_1900 "bacillus~~ pestis~~" (lehmann and neumann 1896) migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4JER FirstGlance]. <br>		<table><tr><td colspan='2'>[[4jer]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JER FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>~~		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jes\|4jes]], [[4jet\|4jet]]</td></tr>~~		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jer OCA], [https://pdbe.org/4jer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jer RCSB], [https://www.ebi.ac.uk/pdbsum/4jer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jer ProSAT]</span></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hasA, y0314, YP_3127, YPO3922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4jer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jer OCA], [~~http~~://pdbe.org/4jer PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4jer RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4jer PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4jer ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q0WA92_YERPE Q0WA92_YERPE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Battaile, K P~~]]		[[Category: Large Structures]]
	[[Category: ~~Kumar, R~~]]		[[Category: Yersinia pestis]]
	[[Category: ~~Lovell, S~~]]		[[Category: Battaile KP]]
	[[Category: ~~Rivera, M~~]]		[[Category: Kumar R]]
	[[Category: ~~Heme binding protein~~]]		[[Category: Lovell S]]
	[[Category: ~~Transport protein~~]]		[[Category: Rivera M]]

OCA at 14:03, 5 August 2016

2016-08-05T14:03:07Z

← Older revision		Revision as of 14:03, 5 August 2016
Line 1:		Line 1:

	==1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)==		==1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)==
	<StructureSection load='4jer' size='340' side='right' caption='[[4jer]], [[Resolution\|resolution]] 1.10Å' scene=''>		<StructureSection load='4jer' size='340' side='right' caption='[[4jer]], [[Resolution\|resolution]] 1.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4jer]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Yersinia_pestis Yersinia~~ pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JER FirstGlance]. <br>		<table><tr><td colspan='2'>[[4jer]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pestis"_(lehmann_and_neumann_1896)_migula_1900 "bacillus pestis" (lehmann and neumann 1896) migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JER FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jes\|4jes]], [[4jet\|4jet]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jes\|4jes]], [[4jet\|4jet]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hasA, y0314, YP_3127, YPO3922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 ~~Yersinia~~ pestis])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hasA, y0314, YP_3127, YPO3922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jer OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jer RCSB], [http://www.ebi.ac.uk/pdbsum/4jer PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jer OCA], [http://pdbe.org/4jer PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jer RCSB], [http://www.ebi.ac.uk/pdbsum/4jer PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jer ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
			<div class="pdbe-citations 4jer" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Yersinia pestis]]~~
	[[Category: Battaile, K P]]		[[Category: Battaile, K P]]
	[[Category: Kumar, R]]		[[Category: Kumar, R]]

OCA at 13:04, 21 December 2014

2014-12-21T13:04:49Z

← Older revision		Revision as of 13:04, 21 December 2014
Line 1:		Line 1:
	~~{{STRUCTURE_4jer\| PDB=4jer \| SCENE= }}~~		==1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)==
	===1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)===		<StructureSection load='4jer' size='340' side='right' caption='[[4jer]], [[Resolution\|resolution]] 1.10Å' scene=''>
	~~{{ABSTRACT_PUBMED_23578210}}~~		== Structural highlights ==
			<table><tr><td colspan='2'>[[4jer]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JER FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
			<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jes\|4jes]], [[4jet\|4jet]]</td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hasA, y0314, YP_3127, YPO3922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 Yersinia pestis])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jer OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jer RCSB], [http://www.ebi.ac.uk/pdbsum/4jer PDBsum]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Hemophores from Serratia marcescens (HasAsm) and Pseudomonas aeruginosa (HasAp) bind hemin between two loops, which harbor the axial ligands H32 and Y75. Hemin binding to the Y75 loop triggers closing of the H32 loop and enables binding of H32. Because Yersinia pestis HasA (HasAyp) presents a Gln at position 32, we determined the structures of apo- and holo-HasAyp. Surprisingly, the Q32 loop in apo-HasAyp is already in the closed conformation, but no residue from the Q32 loop binds hemin in holo-HasAyp. In agreement with the minimal reorganization between the apo- and holo-structures, the hemin on-rate is too fast to detect by conventional stopped-flow measurements.

	~~==About this Structure==~~		The Hemophore HasA from Yersinia pestis (HasAyp) Coordinates Hemin with a Single Residue, Tyr75, and with Minimal Conformational Change.,Kumar R, Lovell S, Matsumura H, Battaile KP, Moenne-Loccoz P, Rivera M Biochemistry. 2013 Apr 23;52(16):2705-7. doi: 10.1021/bi400280z. Epub 2013 Apr, 11. PMID:23578210<ref>PMID:23578210</ref>
	~~[[4jer]] is~~ a ~~1 chain structure~~ with ~~sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Yersinia_pestis Yersinia pestis]~~. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.~~ac.il/oca-bin~~/~~ocashort?id=4JER OCA].~~

	==~~Reference~~==		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	~~<ref group="xtra">PMID:023578210</ref>~~<references ~~group="xtra"~~/><~~references~~/>		</div>
			== References ==
			<references/>
			__TOC__
			</StructureSection>
	[[Category: Yersinia pestis]]		[[Category: Yersinia pestis]]
	[[Category: Battaile, K P.]]		[[Category: Battaile, K P]]
	[[Category: Kumar, R.]]		[[Category: Kumar, R]]
	[[Category: Lovell, S.]]		[[Category: Lovell, S]]
	[[Category: Rivera, M.]]		[[Category: Rivera, M]]
	[[Category: Heme binding protein]]		[[Category: Heme binding protein]]
	[[Category: Transport protein]]		[[Category: Transport protein]]

OCA at 16:34, 19 June 2013

2013-06-19T16:34:02Z

← Older revision		Revision as of 16:34, 19 June 2013
Line 5:		Line 5:
	==About this Structure==		==About this Structure==
	[[4jer]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA].		[[4jer]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA].

			==Reference==
			<ref group="xtra">PMID:023578210</ref><references group="xtra"/><references/>
	[[Category: Yersinia pestis]]		[[Category: Yersinia pestis]]
	[[Category: Battaile, K P.]]		[[Category: Battaile, K P.]]

OCA at 11:19, 24 April 2013

2013-04-24T11:19:30Z

← Older revision		Revision as of 11:19, 24 April 2013
Line 1:		Line 1:
	~~'''Unreleased~~ structure~~'''~~		{{STRUCTURE_4jer\| PDB=4jer \| SCENE= }}
			===1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)===
			{{ABSTRACT_PUBMED_23578210}}

	~~The entry~~ 4jer is ~~ON HOLD until Paper Publication~~		==About this Structure==
			[[4jer]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JER OCA].
	~~Authors~~: Kumar, R., Lovell, S.~~, Battaile, K.P.,~~ Rivera, M.		[[Category: Yersinia pestis]]
			[[Category: Battaile, K P.]]
	~~Description~~:		[[Category: Kumar, R.]]
			[[Category: Lovell, S.]]
			[[Category: Rivera, M.]]
			[[Category: Heme binding protein]]
			[[Category: Transport protein]]

OCA at 16:18, 20 March 2013

2013-03-20T16:18:27Z

← Older revision		Revision as of 16:18, 20 March 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 4jer is ON HOLD		The entry 4jer is ON HOLD until Paper Publication

	Authors: Kumar, ~~Ritesh~~, Lovell, ~~Scott~~, Battaile, ~~Kevin~~ P., Rivera, ~~Mario~~		Authors: Kumar, R., Lovell, S., Battaile, K.P., Rivera, M.

	Description: ~~1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)~~		Description:

OCA: Protected "4jer" [edit=sysop:move=sysop]

2013-03-06T13:54:08Z

Protected "4jer" [edit=sysop:move=sysop]

← Older revision	Revision as of 13:54, 6 March 2013
(No difference)

OCA: New page: '''Unreleased structure''' The entry 4jer is ON HOLD Authors: Kumar, Ritesh, Lovell, Scott, Battaile, Kevin P., Rivera, Mario Description: 1.1A resolution Apo structure of the hemophor...

2013-03-06T13:54:07Z

New page: '''Unreleased structure''' The entry 4jer is ON HOLD Authors: Kumar, Ritesh, Lovell, Scott, Battaile, Kevin P., Rivera, Mario Description: 1.1A resolution Apo structure of the hemophor...

New page

'''Unreleased structure'''

The entry 4jer is ON HOLD

Authors: Kumar, Ritesh, Lovell, Scott, Battaile, Kevin P., Rivera, Mario

Description: 1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)