5aps - Revision history

OCA at 11:14, 10 January 2024

2024-01-10T11:14:47Z

← Older revision		Revision as of 11:14, 10 January 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5aps]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5APS FirstGlance]. <br>		<table><tr><td colspan='2'>[[5aps]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5APS FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5aps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aps OCA], [https://pdbe.org/5aps PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5aps RCSB], [https://www.ebi.ac.uk/pdbsum/5aps PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5aps ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.37Å</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5aps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aps OCA], [https://pdbe.org/5aps PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5aps RCSB], [https://www.ebi.ac.uk/pdbsum/5aps PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5aps ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 06:21, 31 May 2023

2023-05-31T06:21:58Z

← Older revision		Revision as of 06:21, 31 May 2023
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	<StructureSection load='5aps' size='340' side='right'caption='[[5aps]], [[Resolution\|resolution]] 1.37Å' scene=''>		<StructureSection load='5aps' size='340' side='right'caption='[[5aps]], [[Resolution\|resolution]] 1.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5aps]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_18824 Atcc 18824~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5APS FirstGlance]. <br>		<table><tr><td colspan='2'>[[5aps]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5APS FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5app\|5app]], [[5apq\|5apq]], [[5apt\|5apt]], [[5apu\|5apu]], [[5apv\|5apv]], [[5apw\|5apw]], [[5apx\|5apx]], [[5apy\|5apy]], [[5apz\|5apz]]</td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5aps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aps OCA], [https://pdbe.org/5aps PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5aps RCSB], [https://www.ebi.ac.uk/pdbsum/5aps PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5aps ProSAT]</span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5aps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aps OCA], [~~http~~://pdbe.org/5aps PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5aps RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5aps PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5aps ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[~~[http~~://www.uniprot.org/uniprot/GCN4_YEAST GCN4_YEAST]] Is a transcription factor that is responsible for the activation of more than 30 genes required for amino acid or for purine biosynthesis in response to amino acid or purine starvation. Binds and recognize the DNA sequence: 5'-TGA[CG]TCA-3'.		[https://www.uniprot.org/uniprot/GCN4_YEAST GCN4_YEAST] Is a transcription factor that is responsible for the activation of more than 30 genes required for amino acid or for purine biosynthesis in response to amino acid or purine starvation. Binds and recognize the DNA sequence: 5'-TGA[CG]TCA-3'.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	==See Also==		==See Also==
	*[[Gcn4\|Gcn4]]		*[[Gcn4 3D Structures\|Gcn4 3D Structures]]
			*[[Gnc4 3D Structures\|Gnc4 3D Structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Atcc 18824]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Alvarez, B Hernandez~~]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: Hartmann~~, M D~~]]		[[Category: Hartmann MD]]
	[[Category: ~~Lupas, A N~~]]		[[Category: Hernandez Alvarez B]]
	[[Category: ~~Mendler, C T~~]]		[[Category: Lupas AN]]
	[[Category: ~~Structural protein]]~~		[[Category: Mendler CT]]
	~~[[Category: Trimer~~]]

OCA at 07:34, 3 July 2019

2019-07-03T07:34:48Z

← Older revision		Revision as of 07:34, 3 July 2019
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	==Sequence IENKKAD inserted between GCN4 adaptors - Structure A7==		==Sequence IENKKAD inserted between GCN4 adaptors - Structure A7==
	<StructureSection load='5aps' size='340' side='right' caption='[[5aps]], [[Resolution\|resolution]] 1.37Å' scene=''>		<StructureSection load='5aps' size='340' side='right'caption='[[5aps]], [[Resolution\|resolution]] 1.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5aps]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5APS FirstGlance]. <br>		<table><tr><td colspan='2'>[[5aps]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5APS FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5app\|5app]], [[5apq\|5apq]], [[5apt\|5apt]], [[5apu\|5apu]], [[5apv\|5apv]], [[5apw\|5apw]], [[5apx\|5apx]], [[5apy\|5apy]], [[5apz\|5apz]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5app\|5app]], [[5apq\|5apq]], [[5apt\|5apt]], [[5apu\|5apu]], [[5apv\|5apv]], [[5apw\|5apw]], [[5apx\|5apx]], [[5apy\|5apy]], [[5apz\|5apz]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5aps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aps OCA], [http://pdbe.org/5aps PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5aps RCSB], [http://www.ebi.ac.uk/pdbsum/5aps PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5aps ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5aps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aps OCA], [http://pdbe.org/5aps PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5aps RCSB], [http://www.ebi.ac.uk/pdbsum/5aps PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5aps ProSAT]</span></td></tr>
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	</div>		</div>
	<div class="pdbe-citations 5aps" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5aps" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Gcn4\|Gcn4]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Atcc 18824]]
			[[Category: Large Structures]]
	[[Category: Alvarez, B Hernandez]]		[[Category: Alvarez, B Hernandez]]
	[[Category: Hartmann, M D]]		[[Category: Hartmann, M D]]

OCA at 09:39, 22 March 2017

2017-03-22T09:39:18Z

← Older revision		Revision as of 09:39, 22 March 2017
Line 1:		Line 1:

	==Sequence IENKKAD inserted between GCN4 adaptors - Structure A7==		==Sequence IENKKAD inserted between GCN4 adaptors - Structure A7==
	<StructureSection load='5aps' size='340' side='right' caption='[[5aps]], [[Resolution\|resolution]] 1.37Å' scene=''>		<StructureSection load='5aps' size='340' side='right' caption='[[5aps]], [[Resolution\|resolution]] 1.37Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[5aps]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5APS FirstGlance]. <br>		<table><tr><td colspan='2'>[[5aps]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5APS FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5app\|5app]], [[5apq\|5apq]], [[5apt\|5apt]], [[5apu\|5apu]], [[5apv\|5apv]], [[5apw\|5apw]], [[5apx\|5apx]], [[5apy\|5apy]], [[5apz\|5apz]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5app\|5app]], [[5apq\|5apq]], [[5apt\|5apt]], [[5apu\|5apu]], [[5apv\|5apv]], [[5apw\|5apw]], [[5apx\|5apx]], [[5apy\|5apy]], [[5apz\|5apz]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5aps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aps OCA], [http://pdbe.org/5aps PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5aps RCSB], [http://www.ebi.ac.uk/pdbsum/5aps PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5aps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aps OCA], [http://pdbe.org/5aps PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5aps RCSB], [http://www.ebi.ac.uk/pdbsum/5aps PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5aps ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 02:07, 28 January 2016

2016-01-28T02:07:31Z

← Older revision		Revision as of 02:07, 28 January 2016
Line 1:		Line 1:
	'''~~Unreleased~~ structure'''		==Sequence IENKKAD inserted between GCN4 adaptors - Structure A7==
			<StructureSection load='5aps' size='340' side='right' caption='[[5aps]], [[Resolution\|resolution]] 1.37Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[5aps]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5APS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5APS FirstGlance]. <br>
			</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5app\|5app]], [[5apq\|5apq]], [[5apt\|5apt]], [[5apu\|5apu]], [[5apv\|5apv]], [[5apw\|5apw]], [[5apx\|5apx]], [[5apy\|5apy]], [[5apz\|5apz]]</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5aps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aps OCA], [http://pdbe.org/5aps PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5aps RCSB], [http://www.ebi.ac.uk/pdbsum/5aps PDBsum]</span></td></tr>
			</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/GCN4_YEAST GCN4_YEAST]] Is a transcription factor that is responsible for the activation of more than 30 genes required for amino acid or for purine biosynthesis in response to amino acid or purine starvation. Binds and recognize the DNA sequence: 5'-TGA[CG]TCA-3'.
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Coiled coils are the best-understood protein fold, as their backbone structure can uniquely be described by parametric equations. This level of understanding has allowed their manipulation in unprecedented detail. They do not seem a likely source of surprises, yet we describe here the unexpected formation of a new type of fiber by the simple insertion of two or six residues into the underlying heptad repeat of a parallel, trimeric coiled coil. These insertions strain the supercoil to the breaking point, causing the local formation of short beta-strands, which move the path of the chain by 120 degrees around the trimer axis. The result is an alpha/beta coiled coil, which retains only one backbone hydrogen bond per repeat unit from the parent coiled coil. Our results show that a substantially novel backbone structure is possible within the allowed regions of the Ramachandran space with only minor mutations to a known fold.

	~~The entry 5aps is ON HOLD until Paper Publication~~		alpha/beta coiled coils.,Hartmann MD, Mendler CT, Bassler J, Karamichali I, Ridderbusch O, Lupas AN, Hernandez Alvarez B Elife. 2016 Jan 15;5. pii: e11861. doi: 10.7554/eLife.11861. PMID:26771248<ref>PMID:26771248</ref>

	~~Authors: Hartmann, M.D., Mendler, C.T., Lupas~~, A.N.~~, Hernandez Alvarez, B~~.		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~Description~~: ~~Sequence IENKKAD inserted between GCN4 adaptors -Structure A7~~		<div class="pdbe-citations 5aps" style="background-color:#fffaf0;"></div>
	[[Category: ~~Unreleased Structures~~]]		== References ==
	[[Category: Hartmann, M.D]]		<references/>
	[[Category: Mendler, C.T]]		__TOC__
	[[Category: ~~Lupas, A.N~~]]		</StructureSection>
	[[Category: ~~Hernandez Alvarez, B~~]]		[[Category: Alvarez, B Hernandez]]
			[[Category: Hartmann, M D]]
			[[Category: Lupas, A N]]
			[[Category: Mendler, C T]]
			[[Category: Structural protein]]
			[[Category: Trimer]]

OCA at 02:21, 22 October 2015

2015-10-22T02:21:12Z

← Older revision		Revision as of 02:21, 22 October 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 5aps is ON HOLD		The entry 5aps is ON HOLD until Paper Publication

	Authors: Hartmann, M.D., Mendler, C.T., Lupas, A.N., Hernandez Alvarez, B.		Authors: Hartmann, M.D., Mendler, C.T., Lupas, A.N., Hernandez Alvarez, B.

OCA: Protected "5aps" [edit=sysop:move=sysop]

2015-09-30T11:20:46Z

Protected "5aps" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:20, 30 September 2015
(No difference)

OCA: New page: '''Unreleased structure''' The entry 5aps is ON HOLD Authors: Hartmann, M.D., Mendler, C.T., Lupas, A.N., Hernandez Alvarez, B. Description: Sequence IENKKAD inserted between GCN4 adap...

2015-09-30T11:20:45Z

New page: '''Unreleased structure''' The entry 5aps is ON HOLD Authors: Hartmann, M.D., Mendler, C.T., Lupas, A.N., Hernandez Alvarez, B. Description: Sequence IENKKAD inserted between GCN4 adap...

New page

'''Unreleased structure'''

The entry 5aps is ON HOLD

Authors: Hartmann, M.D., Mendler, C.T., Lupas, A.N., Hernandez Alvarez, B.

Description: Sequence IENKKAD inserted between GCN4 adaptors -Structure A7
[[Category: Unreleased Structures]]
[[Category: Hartmann, M.D]]
[[Category: Mendler, C.T]]
[[Category: Lupas, A.N]]
[[Category: Hernandez Alvarez, B]]