5com - Revision history

OCA at 12:20, 14 June 2023

2023-06-14T12:20:28Z

← Older revision		Revision as of 12:20, 14 June 2023
Line 3:		Line 3:
	<StructureSection load='5com' size='340' side='right'caption='[[5com]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='5com' size='340' side='right'caption='[[5com]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5com]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Clod6 Clod6~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5COM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5COM FirstGlance]. <br>		<table><tr><td colspan='2'>[[5com]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5COM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5COM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene>~~</td></tr>~~		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5com FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5com OCA], [https://pdbe.org/5com PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5com RCSB], [https://www.ebi.ac.uk/pdbsum/5com PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5com ProSAT]</span></td></tr>
	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CD630_18460 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272563 CLOD6])~~</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5com FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5com OCA], [~~http~~://pdbe.org/5com PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5com RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5com PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5com ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q187F5_CLOD6 Q187F5_CLOD6]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Clod6~~]]		[[Category: Clostridioides difficile 630]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Matthews~~, S J~~]]		[[Category: Matthews SJ]]
	[[Category: Taylor, G]]		[[Category: Taylor G]]
	[[Category: Taylor~~, J D]]~~		[[Category: Taylor JD]]
	~~[[Category: Dfsb]]~~
	~~[[Category: Duf1706]]~~
	~~[[Category: Replication]]~~
	~~[[Category: Unknown function~~]]

OCA at 11:47, 27 March 2020

2020-03-27T11:47:55Z

← Older revision		Revision as of 11:47, 27 March 2020
Line 1:		Line 1:

	==Crystal structure of Uncharacterized Protein Q187F5 from Clostridium difficile 630==		==Crystal structure of Uncharacterized Protein Q187F5 from Clostridium difficile 630==
	<StructureSection load='5com' size='340' side='right' caption='[[5com]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='5com' size='340' side='right'caption='[[5com]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5com]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5COM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5COM FirstGlance]. <br>		<table><tr><td colspan='2'>[[5com]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clod6 Clod6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5COM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5COM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5com FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5com OCA], [http://pdbe.org/5com PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5com RCSB], [http://www.ebi.ac.uk/pdbsum/5com PDBsum]</span></td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CD630_18460 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272563 CLOD6])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5com FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5com OCA], [http://pdbe.org/5com PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5com RCSB], [http://www.ebi.ac.uk/pdbsum/5com PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5com ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Clod6]]
			[[Category: Large Structures]]
	[[Category: Matthews, S J]]		[[Category: Matthews, S J]]
	[[Category: Taylor, G]]		[[Category: Taylor, G]]

OCA at 06:59, 2 March 2016

2016-03-02T06:59:04Z

← Older revision		Revision as of 06:59, 2 March 2016
Line 1:		Line 1:

	==Crystal structure of Uncharacterized Protein Q187F5 from Clostridium difficile 630==		==Crystal structure of Uncharacterized Protein Q187F5 from Clostridium difficile 630==
	<StructureSection load='5com' size='340' side='right' caption='[[5com]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='5com' size='340' side='right' caption='[[5com]], [[Resolution\|resolution]] 1.85Å' scene=''>

OCA at 15:41, 3 February 2016

2016-02-03T15:41:39Z

← Older revision		Revision as of 15:41, 3 February 2016
Line 1:		Line 1:
	'''~~Unreleased~~ structure'''		==Crystal structure of Uncharacterized Protein Q187F5 from Clostridium difficile 630==
			<StructureSection load='5com' size='340' side='right' caption='[[5com]], [[Resolution\|resolution]] 1.85Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[5com]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5COM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5COM FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
			<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5com FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5com OCA], [http://pdbe.org/5com PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5com RCSB], [http://www.ebi.ac.uk/pdbsum/5com PDBsum]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Bacteria have developed a variety of mechanisms for surviving harsh environmental conditions, nutrient stress and overpopulation. Paenibacillus dendritiformis produces a lethal protein (Slf) that is able to induce cell death in neighbouring colonies and a phenotypic switch in more distant ones. Slf is derived from the secreted precursor protein, DfsB, after proteolytic processing. Here, we present new crystal structures of DfsB homologues from a variety of bacterial species and a surprising version present in the yeast Saccharomyces cerevisiae. Adopting a four-helix bundle decorated with a further three short helices within intervening loops, DfsB belongs to a non-enzymatic class of the DinB fold. The structure suggests that the biologically active Slf fragment may possess a C-terminal helix rich in basic and aromatic residues that suggest a functional mechanism akin to that for cationic antimicrobial peptides.

	~~The entry 5com is ON HOLD until Paper Publication~~		Structures of the DfsB Protein Family Suggest a Cationic, Helical Sibling Lethal Factor Peptide.,Taylor JD, Taylor G, Hare SA, Matthews SJ J Mol Biol. 2016 Jan 21. pii: S0022-2836(16)00032-2. doi:, 10.1016/j.jmb.2016.01.013. PMID:26804569<ref>PMID:26804569</ref>

	~~Authors: Taylor, J.D., Taylor~~, G.~~, Matthews,~~ S.J.		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
	~~Description~~:		<div class="pdbe-citations 5com" style="background-color:#fffaf0;"></div>
	~~[[Category: Unreleased Structures]]~~		== References ==
	[[Category: Matthews, S.J]]		<references/>
			__TOC__
			</StructureSection>
			[[Category: Matthews, S J]]
	[[Category: Taylor, G]]		[[Category: Taylor, G]]
	[[Category: Taylor, J.D]]		[[Category: Taylor, J D]]
			[[Category: Dfsb]]
			[[Category: Duf1706]]
			[[Category: Replication]]
			[[Category: Unknown function]]

OCA: Protected "5com" [edit=sysop:move=sysop]

2015-07-29T13:39:32Z

Protected "5com" [edit=sysop:move=sysop]

← Older revision	Revision as of 13:39, 29 July 2015
(No difference)

OCA: New page: '''Unreleased structure''' The entry 5com is ON HOLD until Paper Publication Authors: Taylor, J.D., Taylor, G., Matthews, S.J. Description: Category: Unreleased Structures [[Categ...

2015-07-29T13:39:31Z

New page: '''Unreleased structure''' The entry 5com is ON HOLD until Paper Publication Authors: Taylor, J.D., Taylor, G., Matthews, S.J. Description: Category: Unreleased Structures [[Categ...

New page

'''Unreleased structure'''

The entry 5com is ON HOLD until Paper Publication

Authors: Taylor, J.D., Taylor, G., Matthews, S.J.

Description:
[[Category: Unreleased Structures]]
[[Category: Matthews, S.J]]
[[Category: Taylor, G]]
[[Category: Taylor, J.D]]