5dcd - Revision history

OCA at 12:23, 6 March 2024

2024-03-06T12:23:49Z

← Older revision		Revision as of 12:23, 6 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5dcd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis_MC58 Neisseria meningitidis MC58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[5dcd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis_MC58 Neisseria meningitidis MC58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DCD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TMO:TRIMETHYLAMINE+OXIDE'>TMO</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.31Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TMO:TRIMETHYLAMINE+OXIDE'>TMO</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dcd OCA], [https://pdbe.org/5dcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dcd RCSB], [https://www.ebi.ac.uk/pdbsum/5dcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dcd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dcd OCA], [https://pdbe.org/5dcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dcd RCSB], [https://www.ebi.ac.uk/pdbsum/5dcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dcd ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:30, 21 June 2023

2023-06-21T10:30:09Z

← Older revision		Revision as of 10:30, 21 June 2023
Line 3:		Line 3:
	<StructureSection load='5dcd' size='340' side='right'caption='[[5dcd]], [[Resolution\|resolution]] 2.31Å' scene=''>		<StructureSection load='5dcd' size='340' side='right'caption='[[5dcd]], [[Resolution\|resolution]] 2.31Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5dcd]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Neimb Neimb~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DCD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[5dcd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis_MC58 Neisseria meningitidis MC58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DCD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TMO:TRIMETHYLAMINE+OXIDE'>TMO</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TMO:TRIMETHYLAMINE+OXIDE'>TMO</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>
	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5dcb\|5dcb]], [[5dce\|5dce]]</td></tr>~~		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dcd OCA], [https://pdbe.org/5dcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dcd RCSB], [https://www.ebi.ac.uk/pdbsum/5dcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dcd ProSAT]</span></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aroG, NMB0307 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-deoxy-7-phosphoheptulonate_synthase 3-deoxy-7-phosphoheptulonate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.54 2.5.1.54] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dcd OCA], [~~http~~://pdbe.org/5dcd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5dcd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5dcd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5dcd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[~~[http~~://www.uniprot.org/uniprot/Q9K169_NEIMB Q9K169_NEIMB]] Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) (By similarity).[PIRNR:PIRNR001361]		[https://www.uniprot.org/uniprot/Q9K169_NEIMB Q9K169_NEIMB] Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) (By similarity).[PIRNR:PIRNR001361]

	==See Also==		==See Also==
Line 17:		Line 14:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: 3-deoxy-7-phosphoheptulonate synthase]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Neimb~~]]		[[Category: Neisseria meningitidis MC58]]
	[[Category: Heyes~~, L C~~]]		[[Category: Heyes LC]]
	[[Category: Parker, E]]		[[Category: Parker E]]
	~~[[Category: Allostery]]~~
	~~[[Category: Aromatic amino acid]]~~
	~~[[Category: Ligand]]~~
	~~[[Category: Regulated]]~~
	~~[[Category: Transferase~~]]

OCA at 07:58, 8 April 2020

2020-04-08T07:58:58Z

← Older revision		Revision as of 07:58, 8 April 2020
Line 1:		Line 1:

	==Neisseria meningitidis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase regulated (Tyrosine)==		==Neisseria meningitidis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase regulated (Tyrosine)==
	<StructureSection load='5dcd' size='340' side='right' caption='[[5dcd]], [[Resolution\|resolution]] 2.31Å' scene=''>		<StructureSection load='5dcd' size='340' side='right'caption='[[5dcd]], [[Resolution\|resolution]] 2.31Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5dcd]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DCD OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca.weizmann.ac~~.~~il/oca-docs~~/fgij/fg.htm?mol=5DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[5dcd]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Neimb Neimb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DCD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5DCD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TMO:TRIMETHYLAMINE+OXIDE'>TMO</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TMO:TRIMETHYLAMINE+OXIDE'>TMO</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5dcb\|5dcb]], [[5dce\|5dce]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5dcb\|5dcb]], [[5dce\|5dce]]</td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aroG, NMB0307 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-deoxy-7-phosphoheptulonate_synthase 3-deoxy-7-phosphoheptulonate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.54 2.5.1.54] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-deoxy-7-phosphoheptulonate_synthase 3-deoxy-7-phosphoheptulonate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.54 2.5.1.54] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dcd OCA], [http://pdbe.org/5dcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dcd RCSB], [http://www.ebi.ac.uk/pdbsum/5dcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dcd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dcd OCA], [http://pdbe.org/5dcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dcd RCSB], [http://www.ebi.ac.uk/pdbsum/5dcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dcd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/Q9K169_NEIMB Q9K169_NEIMB]] Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) (By similarity).[PIRNR:PIRNR001361]		[[http://www.uniprot.org/uniprot/Q9K169_NEIMB Q9K169_NEIMB]] Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) (By similarity).[PIRNR:PIRNR001361]

			==See Also==
			*[[DAHP synthase 3D structures\|DAHP synthase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: 3-deoxy-7-phosphoheptulonate synthase]]		[[Category: 3-deoxy-7-phosphoheptulonate synthase]]
			[[Category: Large Structures]]
			[[Category: Neimb]]
	[[Category: Heyes, L C]]		[[Category: Heyes, L C]]
	[[Category: Parker, E]]		[[Category: Parker, E]]

OCA at 06:49, 10 September 2016

2016-09-10T06:49:54Z

← Older revision		Revision as of 06:49, 10 September 2016
Line 1:		Line 1:
	~~'''Unreleased structure'''~~

	~~The entry~~ 5dcd is ~~ON HOLD until Aug 24 2017~~		==Neisseria meningitidis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase regulated (Tyrosine)==
			<StructureSection load='5dcd' size='340' side='right' caption='[[5dcd]], [[Resolution\|resolution]] 2.31Å' scene=''>
	~~Authors~~: ~~Heyes~~, L.C., ~~Parker~~, E.		== Structural highlights ==
			<table><tr><td colspan='2'>[[5dcd]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DCD FirstGlance]. <br>
	~~Description~~: ~~Neisseria meningitidis~~ 3-deoxy-D-arabino-heptulosonate 7-phosphate ~~synthase regulated~~ (~~Tyrosine~~)		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TMO:TRIMETHYLAMINE+OXIDE'>TMO</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>
	[[Category: ~~Unreleased Structures~~]]		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5dcb\|5dcb]], [[5dce\|5dce]]</td></tr>
			<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-deoxy-7-phosphoheptulonate_synthase 3-deoxy-7-phosphoheptulonate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.54 2.5.1.54] </span></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dcd OCA], [http://pdbe.org/5dcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dcd RCSB], [http://www.ebi.ac.uk/pdbsum/5dcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dcd ProSAT]</span></td></tr>
			</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/Q9K169_NEIMB Q9K169_NEIMB]] Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) (By similarity).[PIRNR:PIRNR001361]
			__TOC__
			</StructureSection>
			[[Category: 3-deoxy-7-phosphoheptulonate synthase]]
			[[Category: Heyes, L C]]
	[[Category: Parker, E]]		[[Category: Parker, E]]
	[[Category: ~~Heyes, L.C~~]]		[[Category: Allostery]]
			[[Category: Aromatic amino acid]]
			[[Category: Ligand]]
			[[Category: Regulated]]
			[[Category: Transferase]]

OCA at 12:52, 30 September 2015

2015-09-30T12:52:37Z

← Older revision		Revision as of 12:52, 30 September 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 5dcd is ON HOLD		The entry 5dcd is ON HOLD until Aug 24 2017

	Authors: Heyes, L.C., Parker, E.		Authors: Heyes, L.C., Parker, E.

OCA: Protected "5dcd" [edit=sysop:move=sysop]

2015-09-02T11:27:02Z

Protected "5dcd" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:27, 2 September 2015
(No difference)

OCA: New page: '''Unreleased structure''' The entry 5dcd is ON HOLD Authors: Heyes, L.C., Parker, E. Description: Neisseria meningitidis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase regulated...

2015-09-02T11:27:00Z

New page: '''Unreleased structure''' The entry 5dcd is ON HOLD Authors: Heyes, L.C., Parker, E. Description: Neisseria meningitidis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase regulated...

New page

'''Unreleased structure'''

The entry 5dcd is ON HOLD

Authors: Heyes, L.C., Parker, E.

Description: Neisseria meningitidis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase regulated (Tyrosine)
[[Category: Unreleased Structures]]
[[Category: Parker, E]]
[[Category: Heyes, L.C]]