5fbb - Revision history

OCA at 04:05, 21 November 2024

2024-11-21T04:05:02Z

@@ Line 10: / Line 10: @@
 == Function ==
 [https://www.uniprot.org/uniprot/NUS1_ASPOR NUS1_ASPOR] Hydrolyzes only single-stranded DNA and RNA without apparent specificity for bases.
 __TOC__
 </StructureSection>

OCA at 07:22, 1 May 2024

2024-05-01T07:22:38Z

@@ Line 10: / Line 10: @@
 == Function ==
 [https://www.uniprot.org/uniprot/NUS1_ASPOR NUS1_ASPOR] Hydrolyzes only single-stranded DNA and RNA without apparent specificity for bases.
 __TOC__
 </StructureSection>

OCA at 06:45, 19 July 2023

2023-07-19T06:45:01Z

← Older revision		Revision as of 06:45, 19 July 2023
Line 3:		Line 3:
	<StructureSection load='5fbb' size='340' side='right'caption='[[5fbb]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='5fbb' size='340' side='right'caption='[[5fbb]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5fbb]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Aspor Aspor~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FBB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5FBB FirstGlance]. <br>		<table><tr><td colspan='2'>[[5fbb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_oryzae_RIB40 Aspergillus oryzae RIB40]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FBB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FBB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ETE:2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>ETE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fb9\|5fb9]], [[5fba\|5fba]], [[5fbc\|5fbc]], [[5fbd\|5fbd]], [[5fbf\|5fbf]], [[5fbg\|5fbg]]</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ETE:2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>ETE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nucS, AO090001000075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=510516 ASPOR])</td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fbb OCA], [https://pdbe.org/5fbb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fbb RCSB], [https://www.ebi.ac.uk/pdbsum/5fbb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fbb ProSAT]</span></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspergillus_nuclease_S(1) Aspergillus nuclease S(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.30.1 3.1.30.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5fbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fbb OCA], [~~http~~://pdbe.org/5fbb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5fbb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5fbb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5fbb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[~~[http~~://www.uniprot.org/uniprot/NUS1_ASPOR NUS1_ASPOR]] Hydrolyzes only single-stranded DNA and RNA without apparent specificity for bases.		[https://www.uniprot.org/uniprot/NUS1_ASPOR NUS1_ASPOR] Hydrolyzes only single-stranded DNA and RNA without apparent specificity for bases.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Aspor~~]]		[[Category: Aspergillus oryzae RIB40]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Dohnalek, J]]		[[Category: Dohnalek J]]
	[[Category: Koval, T]]		[[Category: Koval T]]
	[[Category: Oestergaard~~, L H]]~~		[[Category: Oestergaard LH]]
	~~[[Category: Complex]]~~
	~~[[Category: Endonuclease]]~~
	~~[[Category: Hydrolase]]~~
	~~[[Category: Zinc dependent~~]]

OCA at 08:08, 29 April 2020

2020-04-29T08:08:37Z

← Older revision		Revision as of 08:08, 29 April 2020
Line 1:		Line 1:

	==S1 nuclease from Aspergillus oryzae in complex with phosphate and adenosine 5'-monophosphate==		==S1 nuclease from Aspergillus oryzae in complex with phosphate and adenosine 5'-monophosphate==
	<StructureSection load='5fbb' size='340' side='right' caption='[[5fbb]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='5fbb' size='340' side='right'caption='[[5fbb]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5fbb]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FBB OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca.weizmann.ac~~.~~il/oca-docs~~/fgij/fg.htm?mol=5FBB FirstGlance]. <br>		<table><tr><td colspan='2'>[[5fbb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspor Aspor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FBB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5FBB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ETE:2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>ETE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ETE:2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>ETE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fb9\|5fb9]], [[5fba\|5fba]], [[5fbc\|5fbc]], [[5fbd\|5fbd]], [[5fbf\|5fbf]], [[5fbg\|5fbg]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fb9\|5fb9]], [[5fba\|5fba]], [[5fbc\|5fbc]], [[5fbd\|5fbd]], [[5fbf\|5fbf]], [[5fbg\|5fbg]]</td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nucS, AO090001000075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=510516 ASPOR])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspergillus_nuclease_S(1) Aspergillus nuclease S(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.30.1 3.1.30.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspergillus_nuclease_S(1) Aspergillus nuclease S(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.30.1 3.1.30.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5fbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fbb OCA], [http://pdbe.org/5fbb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fbb RCSB], [http://www.ebi.ac.uk/pdbsum/5fbb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fbb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5fbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fbb OCA], [http://pdbe.org/5fbb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fbb RCSB], [http://www.ebi.ac.uk/pdbsum/5fbb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fbb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Aspor]]
			[[Category: Large Structures]]
	[[Category: Dohnalek, J]]		[[Category: Dohnalek, J]]
	[[Category: Koval, T]]		[[Category: Koval, T]]

OCA at 07:57, 18 January 2017

2017-01-18T07:57:52Z

@@ Line 11: / Line 11: @@
 == Function ==
 [[http://www.uniprot.org/uniprot/NUS1_ASPOR NUS1_ASPOR]] Hydrolyzes only single-stranded DNA and RNA without apparent specificity for bases.
 __TOC__
 </StructureSection>

OCA at 16:20, 2 January 2017

2017-01-02T16:20:31Z

← Older revision		Revision as of 16:20, 2 January 2017
Line 1:		Line 1:
	~~'''Unreleased structure'''~~

	~~The entry~~ 5fbb is ~~ON HOLD until Paper Publication~~		==S1 nuclease from Aspergillus oryzae in complex with phosphate and adenosine 5'-monophosphate==
			<StructureSection load='5fbb' size='340' side='right' caption='[[5fbb]], [[Resolution\|resolution]] 1.75Å' scene=''>
	~~Authors~~:		== Structural highlights ==
			<table><tr><td colspan='2'>[[5fbb]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FBB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FBB FirstGlance]. <br>
	~~Description~~:		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ETE:2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>ETE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	[[Category: ~~Unreleased Structures~~]]		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fb9\|5fb9]], [[5fba\|5fba]], [[5fbc\|5fbc]], [[5fbd\|5fbd]], [[5fbf\|5fbf]], [[5fbg\|5fbg]]</td></tr>
			<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspergillus_nuclease_S(1) Aspergillus nuclease S(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.30.1 3.1.30.1] </span></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fbb OCA], [http://pdbe.org/5fbb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fbb RCSB], [http://www.ebi.ac.uk/pdbsum/5fbb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fbb ProSAT]</span></td></tr>
			</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/NUS1_ASPOR NUS1_ASPOR]] Hydrolyzes only single-stranded DNA and RNA without apparent specificity for bases.
			__TOC__
			</StructureSection>
			[[Category: Dohnalek, J]]
			[[Category: Koval, T]]
			[[Category: Oestergaard, L H]]
			[[Category: Complex]]
			[[Category: Endonuclease]]
			[[Category: Hydrolase]]
			[[Category: Zinc dependent]]

OCA at 05:57, 14 July 2016

2016-07-14T05:57:05Z

← Older revision		Revision as of 05:57, 14 July 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 5fbb is ON HOLD		The entry 5fbb is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 12:54, 15 May 2016

2016-05-15T12:54:06Z

← Older revision		Revision as of 12:54, 15 May 2016
Line 3:		Line 3:
	The entry 5fbb is ON HOLD		The entry 5fbb is ON HOLD

	Authors: ~~Koval, T., Oestergaard, L.H., Dohnalek, J.~~		Authors:

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	~~[[Category: Dohnalek, J]]~~
	~~[[Category: Koval, T]]~~
	~~[[Category: Oestergaard, L.H]]~~

OCA: Protected "5fbb" [edit=sysop:move=sysop]

2015-12-23T11:24:10Z

Protected "5fbb" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:24, 23 December 2015
(No difference)

OCA: New page: '''Unreleased structure''' The entry 5fbb is ON HOLD Authors: Koval, T., Oestergaard, L.H., Dohnalek, J. Description: Category: Unreleased Structures Category: Dohnalek, J [[C...

2015-12-23T11:24:09Z

New page: '''Unreleased structure''' The entry 5fbb is ON HOLD Authors: Koval, T., Oestergaard, L.H., Dohnalek, J. Description: Category: Unreleased Structures Category: Dohnalek, J [[C...

New page

'''Unreleased structure'''

The entry 5fbb is ON HOLD

Authors: Koval, T., Oestergaard, L.H., Dohnalek, J.

Description:
[[Category: Unreleased Structures]]
[[Category: Dohnalek, J]]
[[Category: Koval, T]]
[[Category: Oestergaard, L.H]]