5ffd - Revision history

OCA at 06:49, 19 July 2023

2023-07-19T06:49:14Z

← Older revision		Revision as of 06:49, 19 July 2023
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	<StructureSection load='5ffd' size='340' side='right'caption='[[5ffd]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='5ffd' size='340' side='right'caption='[[5ffd]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5ffd]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Aphanocapsa_sp~~.~~_(strain_n-1) Aphanocapsa~~ sp. ~~(strain n-1)~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FFD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5FFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[5ffd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FFD FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=AG:SILVER+ION'>AG</scene></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.451Å</td></tr>
	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fej\|5fej]]~~, [[~~5ffa~~\|~~5ffa]], [[5ffb\|5ffb]], [[5ffc\|5ffc]], [[5ffe\|5ffe~~]]</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AG:SILVER+ION'>AG</scene></td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~pcopM ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])~~</td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ffd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ffd OCA], [https://pdbe.org/5ffd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ffd RCSB], [https://www.ebi.ac.uk/pdbsum/5ffd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ffd ProSAT]</span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ffd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ffd OCA], [~~http~~://pdbe.org/5ffd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5ffd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5ffd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5ffd ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q6YRW5_SYNY3 Q6YRW5_SYNY3]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Liu, L~~]]		[[Category: Synechocystis sp. PCC 6803]]
	[[Category: ~~Wang, X~~]]		[[Category: Liu L]]
	[[Category: ~~Zhao, S~~]]		[[Category: Wang X]]
	[[Category: ~~Copper binding protein]]~~		[[Category: Zhao S]]
	~~[[Category: Metal binding protein~~]]

OCA at 11:38, 25 December 2019

2019-12-25T11:38:20Z

← Older revision		Revision as of 11:38, 25 December 2019
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	==CopM in the Ag-bound form (by co-crystallization)==		==CopM in the Ag-bound form (by co-crystallization)==
	<StructureSection load='5ffd' size='340' side='right' caption='[[5ffd]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='5ffd' size='340' side='right'caption='[[5ffd]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5ffd]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[5ffd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FFD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG:SILVER+ION'>AG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG:SILVER+ION'>AG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fej\|5fej]], [[5ffa\|5ffa]], [[5ffb\|5ffb]], [[5ffc\|5ffc]], [[5ffe\|5ffe]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fej\|5fej]], [[5ffa\|5ffa]], [[5ffb\|5ffb]], [[5ffc\|5ffc]], [[5ffe\|5ffe]]</td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pcopM ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ffd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ffd OCA], [http://pdbe.org/5ffd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ffd RCSB], [http://www.ebi.ac.uk/pdbsum/5ffd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ffd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ffd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ffd OCA], [http://pdbe.org/5ffd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ffd RCSB], [http://www.ebi.ac.uk/pdbsum/5ffd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ffd ProSAT]</span></td></tr>
	</table>		</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Copper homeostasis integrates multiple processes from sensing to storage and efflux out of the cell. CopM is a cyanobacterial metallochaperone, the gene for which is located upstream of a two-component system for copper resistance, but the molecular basis for copper recognition by this four-helical bundle protein is unknown. Here, crystal structures of CopM in apo, copper-bound and silver-bound forms are reported. Monovalent copper/silver ions are buried within the bundle core; divalent copper ions are found on the surface of the bundle. The monovalent copper/silver-binding site is constituted by two consecutive histidines and is conserved in a previously functionally unknown protein family. The structural analyses show two conformational states and suggest that flexibility in the first alpha-helix is related to the metallochaperone function. These results also reveal functional diversity from a protein family with a simple four-helical fold.

			Structural basis for copper/silver binding by the Synechocystis metallochaperone CopM.,Zhao S, Wang X, Niu G, Dong W, Wang J, Fang Y, Lin Y, Liu L Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):997-1005. doi:, 10.1107/S2059798316011943. Epub 2016 Aug 18. PMID:27599732<ref>PMID:27599732</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 5ffd" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: Liu, L]]		[[Category: Liu, L]]
	[[Category: Wang, X]]		[[Category: Wang, X]]

OCA at 21:05, 10 September 2016

2016-09-10T21:05:39Z

← Older revision		Revision as of 21:05, 10 September 2016
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	~~'''Unreleased structure'''~~

	~~The entry~~ 5ffd is ~~ON HOLD until Paper Publication~~		==CopM in the Ag-bound form (by co-crystallization)==
			<StructureSection load='5ffd' size='340' side='right' caption='[[5ffd]], [[Resolution\|resolution]] 1.45Å' scene=''>
	~~Authors~~:		== Structural highlights ==
			<table><tr><td colspan='2'>[[5ffd]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FFD FirstGlance]. <br>
	~~Description~~:		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG:SILVER+ION'>AG</scene></td></tr>
	[[Category: ~~Unreleased Structures~~]]		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fej\|5fej]], [[5ffa\|5ffa]], [[5ffb\|5ffb]], [[5ffc\|5ffc]], [[5ffe\|5ffe]]</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ffd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ffd OCA], [http://pdbe.org/5ffd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ffd RCSB], [http://www.ebi.ac.uk/pdbsum/5ffd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ffd ProSAT]</span></td></tr>
			</table>
			__TOC__
			</StructureSection>
			[[Category: Liu, L]]
			[[Category: Wang, X]]
			[[Category: Zhao, S]]
			[[Category: Copper binding protein]]
			[[Category: Metal binding protein]]

OCA at 12:58, 15 May 2016

2016-05-15T12:58:20Z

← Older revision		Revision as of 12:58, 15 May 2016
Line 3:		Line 3:
	The entry 5ffd is ON HOLD until Paper Publication		The entry 5ffd is ON HOLD until Paper Publication

	Authors: ~~Zhao, S., Wang, X., Liu, L.~~		Authors:

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	~~[[Category: Liu, L]]~~
	~~[[Category: Wang, X]]~~
	~~[[Category: Zhao, S]]~~

OCA at 11:00, 7 January 2016

2016-01-07T11:00:00Z

← Older revision		Revision as of 11:00, 7 January 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 5ffd is ON HOLD		The entry 5ffd is ON HOLD until Paper Publication

	Authors: Zhao, S, Wang, X, Liu, L		Authors: Zhao, S., Wang, X., Liu, L.

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: ~~Zhao, S~~, Wang, X, ~~Liu, L~~]]		[[Category: Liu, L]]
			[[Category: Wang, X]]
			[[Category: Zhao, S]]

OCA: Protected "5ffd" [edit=sysop:move=sysop]

2015-12-23T11:35:09Z

Protected "5ffd" [edit=sysop:move=sysop]

← Older revision	Revision as of 11:35, 23 December 2015
(No difference)

OCA: New page: '''Unreleased structure''' The entry 5ffd is ON HOLD Authors: Zhao, S, Wang, X, Liu, L Description: Category: Unreleased Structures Category: Zhao, S, Wang, X, Liu, L

2015-12-23T11:35:08Z

New page: '''Unreleased structure''' The entry 5ffd is ON HOLD Authors: Zhao, S, Wang, X, Liu, L Description: Category: Unreleased Structures Category: Zhao, S, Wang, X, Liu, L

New page

'''Unreleased structure'''

The entry 5ffd is ON HOLD

Authors: Zhao, S, Wang, X, Liu, L

Description:
[[Category: Unreleased Structures]]
[[Category: Zhao, S, Wang, X, Liu, L]]