5ize - Revision history

OCA at 10:39, 6 September 2023

2023-09-06T10:39:53Z

← Older revision		Revision as of 10:39, 6 September 2023
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	<StructureSection load='5ize' size='340' side='right'caption='[[5ize]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='5ize' size='340' side='right'caption='[[5ize]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5ize]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IZE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5IZE FirstGlance]. <br>		<table><tr><td colspan='2'>[[5ize]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hantaan_virus_76-118 Hantaan virus 76-118]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IZE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IZE FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/RNA-directed_RNA_polymerase RNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.48 2.7.7.48]~~ </~~span~~></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5ize FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ize OCA], [~~http~~://pdbe.org/5ize PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5ize RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5ize PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5ize ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ize FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ize OCA], [https://pdbe.org/5ize PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ize RCSB], [https://www.ebi.ac.uk/pdbsum/5ize PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ize ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/L_HANTV L_HANTV]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Hantaan virus 76-118]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: RNA-directed RNA polymerase]]~~		[[Category: Cusack S]]
	[[Category: Cusack, S]]		[[Category: Reguera J]]
	[[Category: Reguera, J]]
	~~[[Category: In complex with manganese metal ion]]~~
	~~[[Category: Transferase~~]]

OCA at 07:22, 10 June 2020

2020-06-10T07:22:29Z

← Older revision		Revision as of 07:22, 10 June 2020
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	==Hantaan virus L protein cap-snatching endonuclease==		==Hantaan virus L protein cap-snatching endonuclease==
	<StructureSection load='5ize' size='340' side='right' caption='[[5ize]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='5ize' size='340' side='right'caption='[[5ize]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5ize]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IZE OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5IZE FirstGlance]. <br>		<table><tr><td colspan='2'>[[5ize]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IZE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IZE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RNA-directed_RNA_polymerase RNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.48 2.7.7.48] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RNA-directed_RNA_polymerase RNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.48 2.7.7.48] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ize FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ize OCA], [http://pdbe.org/5ize PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ize RCSB], [http://www.ebi.ac.uk/pdbsum/5ize PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ize ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ize FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ize OCA], [http://pdbe.org/5ize PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ize RCSB], [http://www.ebi.ac.uk/pdbsum/5ize PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ize ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 5ize" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5ize" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[RNA polymerase 3D structures\|RNA polymerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Large Structures]]
	[[Category: RNA-directed RNA polymerase]]		[[Category: RNA-directed RNA polymerase]]
	[[Category: Cusack, S]]		[[Category: Cusack, S]]

OCA at 10:26, 13 July 2016

2016-07-13T10:26:29Z

← Older revision		Revision as of 10:26, 13 July 2016
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	~~'''Unreleased structure'''~~

	~~The entry~~ 5ize is ~~ON HOLD until Paper~~ Publication		==Hantaan virus L protein cap-snatching endonuclease==
			<StructureSection load='5ize' size='340' side='right' caption='[[5ize]], [[Resolution\|resolution]] 1.70Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[5ize]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IZE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IZE FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene></td></tr>
			<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RNA-directed_RNA_polymerase RNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.48 2.7.7.48] </span></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ize FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ize OCA], [http://pdbe.org/5ize PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ize RCSB], [http://www.ebi.ac.uk/pdbsum/5ize PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ize ProSAT]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Segmented negative strand RNA viruses of the arena-, bunya- and orthomyxovirus families uniquely carry out viral mRNA transcription by the cap-snatching mechanism. This involves cleavage of host mRNAs close to their capped 5' end by an endonuclease (EN) domain located in the N-terminal region of the viral polymerase. We present the structure of the cap-snatching EN of Hantaan virus, a bunyavirus belonging to hantavirus genus. Hantaan EN has an active site configuration, including a metal co-ordinating histidine, and nuclease activity similar to the previously reported La Crosse virus and Influenza virus ENs (orthobunyavirus and orthomyxovirus respectively), but is more active in cleaving a double stranded RNA substrate. In contrast, Lassa arenavirus EN has only acidic metal co-ordinating residues. We present three high resolution structures of Lassa virus EN with different bound ion configurations and show in comparative biophysical and biochemical experiments with Hantaan, La Crosse and influenza ENs that the isolated Lassa EN is essentially inactive. The results are discussed in the light of EN activation mechanisms revealed by recent structures of full-length influenza virus polymerase.

	~~Authors:~~ Reguera, J., Cusack, S.		Comparative Structural and Functional Analysis of Bunyavirus and Arenavirus Cap-Snatching Endonucleases.,Reguera J, Gerlach P, Rosenthal M, Gaudon S, Coscia F, Gunther S, Cusack S PLoS Pathog. 2016 Jun 15;12(6):e1005636. doi: 10.1371/journal.ppat.1005636., eCollection 2016 Jun. PMID:27304209<ref>PMID:27304209</ref>

	~~Description~~: ~~Hantaan virus L protein cap~~-~~snatching endonuclease~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	[[Category: ~~Unreleased Structures~~]]		</div>
			<div class="pdbe-citations 5ize" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
			__TOC__
			</StructureSection>
			[[Category: RNA-directed RNA polymerase]]
			[[Category: Cusack, S]]
	[[Category: Reguera, J]]		[[Category: Reguera, J]]
	[[Category: ~~Cusack, S~~]]		[[Category: In complex with manganese metal ion]]
			[[Category: Transferase]]

OCA: Protected "5ize" [edit=sysop:move=sysop]

2016-05-11T01:12:30Z

Protected "5ize" [edit=sysop:move=sysop]

← Older revision	Revision as of 01:12, 11 May 2016
(No difference)

OCA: New page: '''Unreleased structure''' The entry 5ize is ON HOLD until Paper Publication Authors: Reguera, J., Cusack, S. Description: Hantaan virus L protein cap-snatching endonuclease [[Category...

2016-05-11T01:12:29Z

New page: '''Unreleased structure''' The entry 5ize is ON HOLD until Paper Publication Authors: Reguera, J., Cusack, S. Description: Hantaan virus L protein cap-snatching endonuclease [[Category...

New page

'''Unreleased structure'''

The entry 5ize is ON HOLD until Paper Publication

Authors: Reguera, J., Cusack, S.

Description: Hantaan virus L protein cap-snatching endonuclease
[[Category: Unreleased Structures]]
[[Category: Reguera, J]]
[[Category: Cusack, S]]