5jvb - Revision history

OCA at 19:10, 20 September 2023

2023-09-20T19:10:08Z

← Older revision		Revision as of 19:10, 20 September 2023
Line 1:		Line 1:

	==1.95A resolution structure of PtxB from Trichodesmium erythraeum IMS101 in complex with phosphite==		==1.95A resolution structure of PtxB from Trichodesmium erythraeum IMS101 in complex with phosphite==
	<StructureSection load='5jvb' size='340' side='right' caption='[[5jvb]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='5jvb' size='340' side='right'caption='[[5jvb]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5jvb]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Triei Triei~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JVB FirstGlance]. <br>		<table><tr><td colspan='2'>[[5jvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichodesmium_erythraeum_IMS101 Trichodesmium erythraeum IMS101]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JVB FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=2PO:PHOSPHONATE'>2PO</scene~~></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.95Å</td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~Tery_0366 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203124 TRIEI])~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PO:PHOSPHONATE'>2PO</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvb OCA], [~~http~~://pdbe.org/5jvb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jvb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jvb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvb OCA], [https://pdbe.org/5jvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jvb RCSB], [https://www.ebi.ac.uk/pdbsum/5jvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvb ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q119I9_TRIEI Q119I9_TRIEI]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Triei~~]]		[[Category: Large Structures]]
	[[Category: Adams~~, N B.P~~]]		[[Category: Trichodesmium erythraeum IMS101]]
	[[Category: Bibby~~, T S~~]]		[[Category: Adams NBP]]
	[[Category: Bisson, C]]		[[Category: Bibby TS]]
	[[Category: Hitchcock, A]]		[[Category: Bisson C]]
	[[Category: Hunter~~, C N~~]]		[[Category: Hitchcock A]]
	[[Category: Polyviou, D]]		[[Category: Hunter CN]]
	~~[[Category: Cyanobacteria]]~~		[[Category: Polyviou D]]
	~~[[Category: Phosphite transpoter]]~~
	~~[[Category: Transport protein~~]]

OCA at 07:37, 6 December 2017

2017-12-06T07:37:34Z

← Older revision		Revision as of 07:37, 6 December 2017
Line 3:		Line 3:
	<StructureSection load='5jvb' size='340' side='right' caption='[[5jvb]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='5jvb' size='340' side='right' caption='[[5jvb]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5jvb]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JVB FirstGlance]. <br>		<table><tr><td colspan='2'>[[5jvb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Triei Triei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JVB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2PO:PHOSPHONATE'>2PO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2PO:PHOSPHONATE'>2PO</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tery_0366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=203124 TRIEI])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvb OCA], [http://pdbe.org/5jvb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvb RCSB], [http://www.ebi.ac.uk/pdbsum/5jvb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvb OCA], [http://pdbe.org/5jvb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvb RCSB], [http://www.ebi.ac.uk/pdbsum/5jvb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvb ProSAT]</span></td></tr>
	</table>		</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Inorganic phosphate is the major bioavailable form of the essential nutrient phosphorus. However, the concentration of phosphate in most natural habitats is low enough to limit microbial growth. Under phosphate-depleted conditions some bacteria utilise phosphite and hypophosphite as alternative sources of phosphorus, but the molecular basis of reduced phosphorus acquisition from the environment is not fully understood. Here, we present crystal structures and ligand binding affinities of periplasmic binding proteins from bacterial phosphite and hypophosphite ATP-binding cassette transporters. We reveal that phosphite and hypophosphite specificity results from a combination of steric selection and the presence of a P-H...pi interaction between the ligand and a conserved aromatic residue in the ligand-binding pocket. The characterisation of high affinity and specific transporters has implications for the marine phosphorus redox cycle, and might aid the use of phosphite as an alternative phosphorus source in biotechnological, industrial and agricultural applications.

			The molecular basis of phosphite and hypophosphite recognition by ABC-transporters.,Bisson C, Adams NBP, Stevenson B, Brindley AA, Polyviou D, Bibby TS, Baker PJ, Hunter CN, Hitchcock A Nat Commun. 2017 Nov 23;8(1):1746. doi: 10.1038/s41467-017-01226-8. PMID:29170493<ref>PMID:29170493</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 5jvb" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Triei]]
	[[Category: Adams, N B.P]]		[[Category: Adams, N B.P]]
	[[Category: Bibby, T S]]		[[Category: Bibby, T S]]

OCA at 06:05, 29 November 2017

2017-11-29T06:05:29Z

← Older revision		Revision as of 06:05, 29 November 2017
Line 1:		Line 1:
	~~'''Unreleased structure'''~~

	~~The entry~~ 5jvb is ~~ON HOLD until Paper Publication~~		==1.95A resolution structure of PtxB from Trichodesmium erythraeum IMS101 in complex with phosphite==
			<StructureSection load='5jvb' size='340' side='right' caption='[[5jvb]], [[Resolution\|resolution]] 1.95Å' scene=''>
	~~Authors~~:		== Structural highlights ==
			<table><tr><td colspan='2'>[[5jvb]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JVB FirstGlance]. <br>
	~~Description~~:		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2PO:PHOSPHONATE'>2PO</scene></td></tr>
	[[Category: ~~Unreleased Structures~~]]		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvb OCA], [http://pdbe.org/5jvb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvb RCSB], [http://www.ebi.ac.uk/pdbsum/5jvb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvb ProSAT]</span></td></tr>
			</table>
			__TOC__
			</StructureSection>
			[[Category: Adams, N B.P]]
			[[Category: Bibby, T S]]
			[[Category: Bisson, C]]
			[[Category: Hitchcock, A]]
			[[Category: Hunter, C N]]
			[[Category: Polyviou, D]]
			[[Category: Cyanobacteria]]
			[[Category: Phosphite transpoter]]
			[[Category: Transport protein]]

OCA: Protected "5jvb" [edit=sysop:move=sysop]

2016-06-01T13:53:00Z

Protected "5jvb" [edit=sysop:move=sysop]

← Older revision	Revision as of 13:53, 1 June 2016
(No difference)

OCA: New page: '''Unreleased structure''' The entry 5jvb is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2016-06-01T13:52:59Z

New page: '''Unreleased structure''' The entry 5jvb is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5jvb is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]