5nyl - Revision history

OCA at 07:21, 17 October 2024

2024-10-17T07:21:53Z

@@ Line 9: / Line 9: @@
 == Function ==
 [https://www.uniprot.org/uniprot/I0BZV0_POPPZ I0BZV0_POPPZ]
 __TOC__
 </StructureSection>

OCA at 07:27, 1 May 2024

2024-05-01T07:27:37Z

@@ Line 9: / Line 9: @@
 == Function ==
 [https://www.uniprot.org/uniprot/I0BZV0_POPPZ I0BZV0_POPPZ]
 __TOC__
 </StructureSection>

OCA at 12:16, 22 November 2023

2023-11-22T12:16:12Z

← Older revision		Revision as of 12:16, 22 November 2023
Line 3:		Line 3:
	<StructureSection load='5nyl' size='340' side='right'caption='[[5nyl]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='5nyl' size='340' side='right'caption='[[5nyl]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5nyl]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Hybrid_aspen Hybrid aspen~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NYL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5NYL FirstGlance]. <br>		<table><tr><td colspan='2'>[[5nyl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Populus_tremula_x_Populus_tremuloides Populus tremula x Populus tremuloides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NYL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NYL FirstGlance]. <br>
	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[5nyk\|5nyk]]~~, [[~~5nym~~\|~~5nym]], [[5nyn\|5nyn]], [[5nyo\|5nyo~~]]</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5nyl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nyl OCA], [~~http~~://pdbe.org/5nyl PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5nyl RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5nyl PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5nyl ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nyl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nyl OCA], [https://pdbe.org/5nyl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nyl RCSB], [https://www.ebi.ac.uk/pdbsum/5nyl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nyl ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/I0BZV0_POPPZ I0BZV0_POPPZ]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Hybrid aspen]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Chibani, K~~]]		[[Category: Populus tremula x Populus tremuloides]]
	[[Category: ~~Haouz, A~~]]		[[Category: Chibani K]]
	[[Category: ~~Rouhier, N]]~~		[[Category: Haouz A]]
	~~[[Category: Saul, F~~ A]]		[[Category: Rouhier N]]
	[[Category: ~~Atypical thioredoin~~]]		[[Category: Saul FA]]
	[[Category: ~~Disulfide exchange]]~~
	~~[[Category: Oxidoreductase~~]]

OCA at 12:14, 26 August 2020

2020-08-26T12:14:28Z

← Older revision		Revision as of 12:14, 26 August 2020
Line 1:		Line 1:

	==Crystal structure of an atypical poplar thioredoxin-like2.1 active site mutant==		==Crystal structure of an atypical poplar thioredoxin-like2.1 active site mutant==
	<StructureSection load='5nyl' size='340' side='right' caption='[[5nyl]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='5nyl' size='340' side='right'caption='[[5nyl]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5nyl]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Hybrid_aspen Hybrid aspen]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NYL OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5NYL FirstGlance]. <br>		<table><tr><td colspan='2'>[[5nyl]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Hybrid_aspen Hybrid aspen]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NYL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5NYL FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5nyk\|5nyk]], [[5nym\|5nym]], [[5nyn\|5nyn]], [[5nyo\|5nyo]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5nyk\|5nyk]], [[5nym\|5nym]], [[5nyn\|5nyn]], [[5nyo\|5nyo]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5nyl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nyl OCA], [http://pdbe.org/5nyl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nyl RCSB], [http://www.ebi.ac.uk/pdbsum/5nyl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nyl ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5nyl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nyl OCA], [http://pdbe.org/5nyl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nyl RCSB], [http://www.ebi.ac.uk/pdbsum/5nyl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nyl ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Hybrid aspen]]		[[Category: Hybrid aspen]]
			[[Category: Large Structures]]
	[[Category: Chibani, K]]		[[Category: Chibani, K]]
	[[Category: Haouz, A]]		[[Category: Haouz, A]]

OCA at 06:48, 4 April 2018

2018-04-04T06:48:36Z

← Older revision		Revision as of 06:48, 4 April 2018
Line 3:		Line 3:
	<StructureSection load='5nyl' size='340' side='right' caption='[[5nyl]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='5nyl' size='340' side='right' caption='[[5nyl]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5nyl]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NYL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NYL FirstGlance]. <br>		<table><tr><td colspan='2'>[[5nyl]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Hybrid_aspen Hybrid aspen]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NYL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NYL FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5nyk\|5nyk]], [[5nym\|5nym]], [[5nyn\|5nyn]], [[5nyo\|5nyo]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5nyk\|5nyk]], [[5nym\|5nym]], [[5nyn\|5nyn]], [[5nyo\|5nyo]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nyl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nyl OCA], [http://pdbe.org/5nyl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nyl RCSB], [http://www.ebi.ac.uk/pdbsum/5nyl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nyl ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nyl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nyl OCA], [http://pdbe.org/5nyl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nyl RCSB], [http://www.ebi.ac.uk/pdbsum/5nyl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nyl ProSAT]</span></td></tr>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Hybrid aspen]]
	[[Category: Chibani, K]]		[[Category: Chibani, K]]
	[[Category: Haouz, A]]		[[Category: Haouz, A]]

OCA at 06:18, 28 February 2018

2018-02-28T06:18:49Z

← Older revision		Revision as of 06:18, 28 February 2018
Line 1:		Line 1:
	~~'''Unreleased structure'''~~

	~~The entry~~ 5nyl is ~~ON HOLD~~		==Crystal structure of an atypical poplar thioredoxin-like2.1 active site mutant==
			<StructureSection load='5nyl' size='340' side='right' caption='[[5nyl]], [[Resolution\|resolution]] 1.50Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[5nyl]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NYL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NYL FirstGlance]. <br>
			</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5nyk\|5nyk]], [[5nym\|5nym]], [[5nyn\|5nyn]], [[5nyo\|5nyo]]</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nyl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nyl OCA], [http://pdbe.org/5nyl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nyl RCSB], [http://www.ebi.ac.uk/pdbsum/5nyl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nyl ProSAT]</span></td></tr>
			</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Plastidial thioredoxin (TRX)-like2.1 proteins are atypical thioredoxins possessing a WCRKC active site signature and using glutathione for recycling. To obtain structural information supporting the peculiar catalytic mechanisms and target proteins of these TRXs, we solved the crystal structures of poplar TRX-like2.1 in oxidized and reduced states and of mutated variants. These structures share similar folding with TRXs exhibiting the canonical WCGPC signature. Moreover, the overall conformation is not altered by reduction of the catalytic disulfide bond or in a C45S/C67S variant that formed a disulfide-bridged dimer possibly mimicking reaction intermediates with target proteins. Modelling of the interaction of TRX-like2.1 with both NADPH- and ferredoxin-thioredoxin reductases indicates that the presence of Arg43 and Lys44 residues likely precludes reduction by the plastidial ferredoxin-thioredoxin reductase. This article is protected by copyright. All rights reserved.

	~~Authors:~~ Chibani, K., Saul, ~~F.A.~~, Haouz, A.~~, Rouhier, N~~.		Structural snapshots along the reaction mechanism of the atypical poplar thioredoxin-like2.1.,Chibani K, Saul F, Didierjean C, Rouhier N, Haouz A FEBS Lett. 2018 Feb 17. doi: 10.1002/1873-3468.13009. PMID:29453875<ref>PMID:29453875</ref>

	~~Description: Crystal structure~~ of ~~an atypical poplar thioredoxin-like2~~.~~1 active site mutant~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	~~[[Category~~: ~~Unreleased Structures]]~~		</div>
			<div class="pdbe-citations 5nyl" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
			__TOC__
			</StructureSection>
	[[Category: Chibani, K]]		[[Category: Chibani, K]]
			[[Category: Haouz, A]]
	[[Category: Rouhier, N]]		[[Category: Rouhier, N]]
	[[Category: Saul, F.A]]		[[Category: Saul, F A]]
	[[Category: ~~Haouz, A~~]]		[[Category: Atypical thioredoin]]
			[[Category: Disulfide exchange]]
			[[Category: Oxidoreductase]]

OCA: Protected "5nyl" [edit=sysop:move=sysop]

2017-05-17T12:26:10Z

Protected "5nyl" [edit=sysop:move=sysop]

← Older revision	Revision as of 12:26, 17 May 2017
(No difference)

OCA: New page: '''Unreleased structure''' The entry 5nyl is ON HOLD Authors: Chibani, K., Saul, F.A., Haouz, A., Rouhier, N. Description: Crystal structure of an atypical poplar thioredoxin-like2.1 a...

2017-05-17T12:26:08Z

New page: '''Unreleased structure''' The entry 5nyl is ON HOLD Authors: Chibani, K., Saul, F.A., Haouz, A., Rouhier, N. Description: Crystal structure of an atypical poplar thioredoxin-like2.1 a...

New page

'''Unreleased structure'''

The entry 5nyl is ON HOLD

Authors: Chibani, K., Saul, F.A., Haouz, A., Rouhier, N.

Description: Crystal structure of an atypical poplar thioredoxin-like2.1 active site mutant
[[Category: Unreleased Structures]]
[[Category: Chibani, K]]
[[Category: Rouhier, N]]
[[Category: Saul, F.A]]
[[Category: Haouz, A]]