5raq - Revision history

OCA at 13:15, 18 February 2026

2026-02-18T13:15:23Z

← Older revision		Revision as of 13:15, 18 February 2026
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	<StructureSection load='5raq' size='340' side='right'caption='[[5raq]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='5raq' size='340' side='right'caption='[[5raq]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>~~[[5raq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5RAQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5RAQ FirstGlance]. <br>		<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5RAQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5RAQ FirstGlance]. <br>
	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=S5J:2-[4-(2-methoxyphenyl)piperazin-1-yl]ethanenitrile'>S5J</scene></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=S5J:2-[4-(2-methoxyphenyl)piperazin-1-yl]ethanenitrile'>S5J</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5raq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5raq OCA], [https://pdbe.org/5raq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5raq RCSB], [https://www.ebi.ac.uk/pdbsum/5raq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5raq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5raq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5raq OCA], [https://pdbe.org/5raq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5raq RCSB], [https://www.ebi.ac.uk/pdbsum/5raq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5raq ProSAT]</span></td></tr>
	</table>		</table>
	~~== Function ==~~
	[https://www.uniprot.org/uniprot/KDM3B_HUMAN KDM3B_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Demethylation of Lys residue generates formaldehyde and succinate. May have tumor suppressor activity.<ref>PMID:16603237</ref>

	==See Also==		==See Also==
	*[[Jumonji domain-containing protein 3D structures\|Jumonji domain-containing protein 3D structures]]		*[[Jumonji domain-containing protein 3D structures\|Jumonji domain-containing protein 3D structures]]
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Homo sapiens]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Arrowsmith CH]]		[[Category: Arrowsmith CH]]

OCA at 13:41, 1 March 2024

2024-03-01T13:41:01Z

← Older revision		Revision as of 13:41, 1 March 2024
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	==PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM001577a==		==PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM001577a==
	<StructureSection load='5raq' size='340' side='right'caption='[[5raq]]' scene=''>		<StructureSection load='5raq' size='340' side='right'caption='[[5raq]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5RAQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5RAQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[5raq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5RAQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5RAQ FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5raq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5raq OCA], [~~http~~://pdbe.org/5raq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5raq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5raq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5raq ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=S5J:2-[4-(2-methoxyphenyl)piperazin-1-yl]ethanenitrile'>S5J</scene></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5raq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5raq OCA], [https://pdbe.org/5raq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5raq RCSB], [https://www.ebi.ac.uk/pdbsum/5raq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5raq ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/KDM3B_HUMAN KDM3B_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Demethylation of Lys residue generates formaldehyde and succinate. May have tumor suppressor activity.<ref>PMID:16603237</ref>

			==See Also==
			*[[Jumonji domain-containing protein 3D structures\|Jumonji domain-containing protein 3D structures]]
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Arrowsmith CH]]		[[Category: Arrowsmith CH]]

OCA at 05:38, 22 April 2020

2020-04-22T05:38:44Z

← Older revision		Revision as of 05:38, 22 April 2020
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	~~'''Unreleased structure'''~~

	~~The entry~~ 5raq ~~is ON HOLD~~		==PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM001577a==
			<StructureSection load='5raq' size='340' side='right'caption='[[5raq]]' scene=''>
	~~Authors~~: ~~Snee, M~~.~~, Nowak, R~~.~~, Johansson, C~~.~~, Burgess~~-~~Brown~~, N.A., ~~Arrowsmith~~, C.H., ~~Bountra, C~~.~~, Edwards, A~~.M., ~~Oppermann, U~~.		== Structural highlights ==
			<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5RAQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5RAQ FirstGlance]. <br>
	~~Description: PanDDA analysis group deposition --Crystal Structure of JMJD1B in complex with FM001577a~~		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5raq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5raq OCA], [http://pdbe.org/5raq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5raq RCSB], [http://www.ebi.ac.uk/pdbsum/5raq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5raq ProSAT]</span></td></tr>
	[[Category: ~~Unreleased~~ Structures]]		</table>
	[[Category: ~~Nowak, R~~]]		__TOC__
	[[Category: ~~Edwards, A.M~~]]		</StructureSection>
	[[Category: ~~Arrowsmith, C.H~~]]		[[Category: Large Structures]]
	[[Category: ~~Johansson, C~~]]		[[Category: Arrowsmith CH]]
	[[Category: ~~Oppermann, U~~]]		[[Category: Bountra C]]
	[[Category: ~~Burgess-Brown, N.A~~]]		[[Category: Burgess-Brown NA]]
	[[Category: ~~Snee, M~~]]		[[Category: Edwards AM]]
	[[Category: ~~Bountra, C~~]]		[[Category: Johansson C]]
			[[Category: Nowak R]]
			[[Category: Oppermann U]]
			[[Category: Snee M]]

OCA at 08:10, 27 March 2020

2020-03-27T08:10:00Z

← Older revision		Revision as of 08:10, 27 March 2020
Line 3:		Line 3:
	The entry 5raq is ON HOLD		The entry 5raq is ON HOLD

	Authors: Snee, M., Nowak, R., Johansson, C., Burgess-Brown, N.A., Arrowsmith, C.H, Bountra, C., Edwards, A.M, Oppermann, U.		Authors: Snee, M., Nowak, R., Johansson, C., Burgess-Brown, N.A., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Oppermann, U.

	Description: PanDDA analysis group deposition --Crystal Structure of JMJD1B in complex with FM001577a		Description: PanDDA analysis group deposition --Crystal Structure of JMJD1B in complex with FM001577a
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Nowak, R]]		[[Category: Nowak, R]]
			[[Category: Edwards, A.M]]
			[[Category: Arrowsmith, C.H]]
			[[Category: Johansson, C]]
			[[Category: Oppermann, U]]
	[[Category: Burgess-Brown, N.A]]		[[Category: Burgess-Brown, N.A]]
	~~[[Category: Edwards, A.M, Oppermann, U]]~~
	~~[[Category: Arrowsmith, C.H, Bountra, C]]~~
	~~[[Category: Johansson, C]]~~
	[[Category: Snee, M]]		[[Category: Snee, M]]
			[[Category: Bountra, C]]

OCA: Protected "5raq" [edit=sysop:move=sysop]

2020-03-11T05:53:29Z

Protected "5raq" [edit=sysop:move=sysop]

← Older revision	Revision as of 05:53, 11 March 2020
(No difference)

OCA: New page: '''Unreleased structure''' The entry 5raq is ON HOLD Authors: Snee, M., Nowak, R., Johansson, C., Burgess-Brown, N.A., Arrowsmith, C.H, Bountra, C., Edwards, A.M, Oppermann, U. Descrip...

2020-03-11T05:53:27Z

New page: '''Unreleased structure''' The entry 5raq is ON HOLD Authors: Snee, M., Nowak, R., Johansson, C., Burgess-Brown, N.A., Arrowsmith, C.H, Bountra, C., Edwards, A.M, Oppermann, U. Descrip...

New page

'''Unreleased structure'''

The entry 5raq is ON HOLD

Authors: Snee, M., Nowak, R., Johansson, C., Burgess-Brown, N.A., Arrowsmith, C.H, Bountra, C., Edwards, A.M, Oppermann, U.

Description: PanDDA analysis group deposition --Crystal Structure of JMJD1B in complex with FM001577a
[[Category: Unreleased Structures]]
[[Category: Nowak, R]]
[[Category: Burgess-Brown, N.A]]
[[Category: Edwards, A.M, Oppermann, U]]
[[Category: Arrowsmith, C.H, Bountra, C]]
[[Category: Johansson, C]]
[[Category: Snee, M]]