6aaa - Revision history

OCA at 09:22, 22 November 2023

2023-11-22T09:22:33Z

← Older revision		Revision as of 09:22, 22 November 2023
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	<StructureSection load='6aaa' size='340' side='right'caption='[[6aaa]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='6aaa' size='340' side='right'caption='[[6aaa]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6aaa]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Amydetes Amydetes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AAA OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6AAA FirstGlance]. <br>		<table><tr><td colspan='2'>[[6aaa]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Amydetes Amydetes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AAA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6AAA FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </~~span~~></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6aaa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aaa OCA], [~~http~~://pdbe.org/6aaa PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6aaa RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6aaa PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6aaa ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6aaa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aaa OCA], [https://pdbe.org/6aaa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6aaa RCSB], [https://www.ebi.ac.uk/pdbsum/6aaa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6aaa ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/A0A3F2YLV6_9COLE A0A3F2YLV6_9COLE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Amydetes]]		[[Category: Amydetes]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Carrasco-Lopez, C]]		[[Category: Carrasco-Lopez C]]
	[[Category: Naumov, P]]		[[Category: Naumov P]]
	[[Category: Rabeh, W]]		[[Category: Rabeh W]]
	~~[[Category: Bioluminescence]]~~
	~~[[Category: Blue-shifted]]~~
	~~[[Category: Luciferase]]~~
	~~[[Category: Luminescent protein~~]]

OCA at 21:27, 28 October 2020

2020-10-28T21:27:21Z

← Older revision		Revision as of 21:27, 28 October 2020
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	==Structure of a blue-shifted Luciferase from Amydetes vivianii==		==Structure of a blue-shifted Luciferase from Amydetes vivianii==
	<StructureSection load='6aaa' size='340' side='right' caption='[[6aaa]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='6aaa' size='340' side='right'caption='[[6aaa]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6aaa]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Amydetes Amydetes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AAA OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6AAA FirstGlance]. <br>		<table><tr><td colspan='2'>[[6aaa]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Amydetes Amydetes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AAA OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6AAA FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6aaa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aaa OCA], [http://pdbe.org/6aaa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6aaa RCSB], [http://www.ebi.ac.uk/pdbsum/6aaa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6aaa ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6aaa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aaa OCA], [http://pdbe.org/6aaa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6aaa RCSB], [http://www.ebi.ac.uk/pdbsum/6aaa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6aaa ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 6aaa" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6aaa" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Luciferase 3D structures\|Luciferase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Amydetes]]		[[Category: Amydetes]]
			[[Category: Large Structures]]
	[[Category: Carrasco-Lopez, C]]		[[Category: Carrasco-Lopez, C]]
	[[Category: Naumov, P]]		[[Category: Naumov, P]]

OCA at 07:01, 5 December 2018

2018-12-05T07:01:06Z

← Older revision		Revision as of 07:01, 5 December 2018
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	<StructureSection load='6aaa' size='340' side='right' caption='[[6aaa]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='6aaa' size='340' side='right' caption='[[6aaa]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6aaa]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AAA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AAA FirstGlance]. <br>		<table><tr><td colspan='2'>[[6aaa]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Amydetes Amydetes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AAA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AAA FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6aaa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aaa OCA], [http://pdbe.org/6aaa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6aaa RCSB], [http://www.ebi.ac.uk/pdbsum/6aaa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6aaa ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6aaa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aaa OCA], [http://pdbe.org/6aaa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6aaa RCSB], [http://www.ebi.ac.uk/pdbsum/6aaa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6aaa ProSAT]</span></td></tr>
	</table>		</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The different colors of light emitted by bioluminescent beetles that use an identical substrate and chemiexcitation reaction sequence to generate light remain a challenging and controversial mechanistic conundrum. The crystal structures of two beetle luciferases with red- and blue-shifted light relative to the green yellow light of the common firefly species provide direct insight into the molecular origin of the bioluminescence color. The structure of a blue-shifted green-emitting luciferase from the firefly Amydetes vivianii is monomeric with a structural fold similar to the previously reported firefly luciferases. The only known naturally red-emitting luciferase from the glow-worm Phrixothrix hirtus exists as tetramers and octamers. Structural and computational analyses reveal varying aperture between the two domains enclosing the active site. Mutagenesis analysis identified two conserved loops that contribute to the color of the emitted light. These results are expected to advance comparative computational studies into the conformational landscape of the luciferase reaction sequence.

			Beetle luciferases with naturally red- and blue-shifted emission.,Carrasco-Lopez C, Ferreira JC, Lui NM, Schramm S, Berraud-Pache R, Navizet I, Panjikar S, Naumov P, Rabeh WM Life Sci Alliance. 2018 Aug 16;1(4):e201800072. doi: 10.26508/lsa.201800072., eCollection 2018 Aug. PMID:30456363<ref>PMID:30456363</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 6aaa" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Amydetes]]
	[[Category: Carrasco-Lopez, C]]		[[Category: Carrasco-Lopez, C]]
	[[Category: Naumov, P]]		[[Category: Naumov, P]]

OCA at 06:02, 22 August 2018

2018-08-22T06:02:33Z

← Older revision		Revision as of 06:02, 22 August 2018
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	~~'''Unreleased structure'''~~

	~~The entry~~ 6aaa is ~~ON HOLD until Paper Publication~~		==Structure of a blue-shifted Luciferase from Amydetes vivianii==
			<StructureSection load='6aaa' size='340' side='right' caption='[[6aaa]], [[Resolution\|resolution]] 1.90Å' scene=''>
	~~Authors~~:		== Structural highlights ==
			<table><tr><td colspan='2'>[[6aaa]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AAA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AAA FirstGlance]. <br>
	~~Description~~:		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	[[Category: ~~Unreleased Structures~~]]		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6aaa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aaa OCA], [http://pdbe.org/6aaa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6aaa RCSB], [http://www.ebi.ac.uk/pdbsum/6aaa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6aaa ProSAT]</span></td></tr>
			</table>
			__TOC__
			</StructureSection>
			[[Category: Carrasco-Lopez, C]]
			[[Category: Naumov, P]]
			[[Category: Rabeh, W]]
			[[Category: Bioluminescence]]
			[[Category: Blue-shifted]]
			[[Category: Luciferase]]
			[[Category: Luminescent protein]]

OCA at 14:36, 15 August 2018

2018-08-15T14:36:34Z

← Older revision		Revision as of 14:36, 15 August 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6aaa is ON HOLD		The entry 6aaa is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6aaa" [edit=sysop:move=sysop]

2018-07-25T05:43:43Z

Protected "6aaa" [edit=sysop:move=sysop]

← Older revision	Revision as of 05:43, 25 July 2018
(No difference)

OCA: New page: '''Unreleased structure''' The entry 6aaa is ON HOLD Authors: Description: Category: Unreleased Structures

2018-07-25T05:43:42Z

New page: '''Unreleased structure''' The entry 6aaa is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6aaa is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]