6cod - Revision history

OCA at 15:08, 4 October 2023

2023-10-04T15:08:29Z

← Older revision		Revision as of 15:08, 4 October 2023
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	<StructureSection load='6cod' size='340' side='right'caption='[[6cod]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6cod' size='340' side='right'caption='[[6cod]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6cod]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6COD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6COD FirstGlance]. <br>		<table><tr><td colspan='2'>[[6cod]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6COD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6COD FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CL:CHLORIDE+ION'>CL</scene~~>, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HBX:BENZALDEHYDE'>HBX</scene>~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~HNL, MES5, At5g10300, F18D22_70 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=3702 ARATH])</td~~></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HBX:BENZALDEHYDE'>HBX</scene></td></tr>
	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/(R)-mandelonitrile_lyase (R)-mandelonitrile lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.10 4.1.2.10]~~ </~~span~~></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cod FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cod OCA], [https://pdbe.org/6cod PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cod RCSB], [https://www.ebi.ac.uk/pdbsum/6cod PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cod ProSAT]</span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6cod FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cod OCA], [~~http~~://pdbe.org/6cod PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6cod RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6cod PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6cod ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[~~[http~~://www.uniprot.org/uniprot/HNL_ARATH HNL_ARATH]] Involved in cyanogenesis, the release of HCN from injured tissues (By similarity). Displays R-selective hydroxynitrile lyase activity. Also accepts nitromethane (MeNO2) as a donor in a reaction with aromatic aldehydes to yield (R)-beta-nitro alcohols.<ref>PMID:18467465</ref> <ref>PMID:19433222</ref> <ref>PMID:21439333</ref> <ref>PMID:17907254</ref>		[https://www.uniprot.org/uniprot/HNL_ARATH HNL_ARATH] Involved in cyanogenesis, the release of HCN from injured tissues (By similarity). Displays R-selective hydroxynitrile lyase activity. Also accepts nitromethane (MeNO2) as a donor in a reaction with aromatic aldehydes to yield (R)-beta-nitro alcohols.<ref>PMID:18467465</ref> <ref>PMID:19433222</ref> <ref>PMID:21439333</ref> <ref>PMID:17907254</ref>

	==See Also==		==See Also==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Arath~~]]		[[Category: Arabidopsis thaliana]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Desrouleaux, R]]		[[Category: Desrouleaux R]]
	[[Category: Jones~~, B J~~]]		[[Category: Jones BJ]]
	[[Category: Kazlauskas~~, R J]]~~		[[Category: Kazlauskas RJ]]
	~~[[Category: Alpha beta hydrolase globular hydroxynitrile lyase]]~~
	~~[[Category: Lyase~~]]

OCA at 10:48, 1 January 2020

2020-01-01T10:48:00Z

← Older revision		Revision as of 10:48, 1 January 2020
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	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/HNL_ARATH HNL_ARATH]] Involved in cyanogenesis, the release of HCN from injured tissues (By similarity). Displays R-selective hydroxynitrile lyase activity. Also accepts nitromethane (MeNO2) as a donor in a reaction with aromatic aldehydes to yield (R)-beta-nitro alcohols.<ref>PMID:18467465</ref> <ref>PMID:19433222</ref> <ref>PMID:21439333</ref> <ref>PMID:17907254</ref>		[[http://www.uniprot.org/uniprot/HNL_ARATH HNL_ARATH]] Involved in cyanogenesis, the release of HCN from injured tissues (By similarity). Displays R-selective hydroxynitrile lyase activity. Also accepts nitromethane (MeNO2) as a donor in a reaction with aromatic aldehydes to yield (R)-beta-nitro alcohols.<ref>PMID:18467465</ref> <ref>PMID:19433222</ref> <ref>PMID:21439333</ref> <ref>PMID:17907254</ref>

			==See Also==
			*[[Methylesterase 3D structures\|Methylesterase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:45, 10 April 2019

2019-04-10T07:45:38Z

← Older revision		Revision as of 07:45, 10 April 2019
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	<StructureSection load='6cod' size='340' side='right'caption='[[6cod]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6cod' size='340' side='right'caption='[[6cod]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6cod]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6COD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6COD FirstGlance]. <br>		<table><tr><td colspan='2'>[[6cod]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6COD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6COD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HBX:BENZALDEHYDE'>HBX</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HBX:BENZALDEHYDE'>HBX</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HNL, MES5, At5g10300, F18D22_70 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/(R)-mandelonitrile_lyase (R)-mandelonitrile lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.10 4.1.2.10] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/(R)-mandelonitrile_lyase (R)-mandelonitrile lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.10 4.1.2.10] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cod FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cod OCA], [http://pdbe.org/6cod PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cod RCSB], [http://www.ebi.ac.uk/pdbsum/6cod PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cod ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cod FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cod OCA], [http://pdbe.org/6cod PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cod RCSB], [http://www.ebi.ac.uk/pdbsum/6cod PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cod ProSAT]</span></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Arath]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Desrouleaux, R]]		[[Category: Desrouleaux, R]]

OCA at 07:46, 20 March 2019

2019-03-20T07:46:17Z

← Older revision		Revision as of 07:46, 20 March 2019
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	~~'''Unreleased structure'''~~

	~~The entry~~ 6cod is ~~ON HOLD~~ ~~until Paper Publication~~		==AtHNL enantioselectivity mutant At-A9-H7 Apo Y13C,Y121L,P126F,L128W,C131T,F179L,A209I with benzaldehyde==
			<StructureSection load='6cod' size='340' side='right'caption='[[6cod]], [[Resolution\|resolution]] 1.80Å' scene=''>
	~~Authors~~:		== Structural highlights ==
			<table><tr><td colspan='2'>[[6cod]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6COD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6COD FirstGlance]. <br>
	~~Description~~:		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HBX:BENZALDEHYDE'>HBX</scene></td></tr>
	[[Category: ~~Unreleased Structures~~]]		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/(R)-mandelonitrile_lyase (R)-mandelonitrile lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.10 4.1.2.10] </span></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cod FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cod OCA], [http://pdbe.org/6cod PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cod RCSB], [http://www.ebi.ac.uk/pdbsum/6cod PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cod ProSAT]</span></td></tr>
			</table>
			== Function ==
			[[http://www.uniprot.org/uniprot/HNL_ARATH HNL_ARATH]] Involved in cyanogenesis, the release of HCN from injured tissues (By similarity). Displays R-selective hydroxynitrile lyase activity. Also accepts nitromethane (MeNO2) as a donor in a reaction with aromatic aldehydes to yield (R)-beta-nitro alcohols.<ref>PMID:18467465</ref> <ref>PMID:19433222</ref> <ref>PMID:21439333</ref> <ref>PMID:17907254</ref>
			== References ==
			<references/>
			__TOC__
			</StructureSection>
			[[Category: Large Structures]]
			[[Category: Desrouleaux, R]]
			[[Category: Jones, B J]]
			[[Category: Kazlauskas, R J]]
			[[Category: Alpha beta hydrolase globular hydroxynitrile lyase]]
			[[Category: Lyase]]

OCA at 05:55, 23 May 2018

2018-05-23T05:55:59Z

← Older revision		Revision as of 05:55, 23 May 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6cod is ON HOLD		The entry 6cod is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6cod" [edit=sysop:move=sysop]

2018-03-21T06:10:23Z

Protected "6cod" [edit=sysop:move=sysop]

← Older revision	Revision as of 06:10, 21 March 2018
(No difference)

OCA: New page: '''Unreleased structure''' The entry 6cod is ON HOLD Authors: Description: Category: Unreleased Structures

2018-03-21T06:10:21Z

New page: '''Unreleased structure''' The entry 6cod is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6cod is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]