6dcd - Revision history

OCA at 13:09, 13 August 2026

2026-08-13T13:09:24Z

← Older revision		Revision as of 13:09, 13 August 2026
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	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/B2HFD6_MYCMM B2HFD6_MYCMM]		[https://www.uniprot.org/uniprot/B2HFD6_MYCMM B2HFD6_MYCMM]
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			BACKGROUND: Actinobacteria, including the Mycobacteria, have a large component of cytochrome P450 family monooxygenases. This includes Mycobacterium tuberculosis, M. ulcerans and M. marinum, and M. vanbaalenii. These enzymes can abstract CH bonds and have important roles in natural product biosynthesis. METHODS: Two members of the bacterial CYP150 family, CYP150A5 and CYP150A6 from M. marinum, were produced, purified and characterised. The potential substrate ranges of both enzymes were analysed and the monooxygenase activity of CYP150A5 was reconstituted using a physiological electron transfer partner system. CYP150A6 was structurally characterised by X-ray crystallography. RESULTS: CYP150A5 was shown to bind various norisoprenoids and terpenoids. It could regioselectively hydroxylate beta-ionol. The X-ray crystal structure of substrate-free CYP150A6 was solved to 1.5A. This displayed an open conformation with short F and G helices, an unresolved F-G loop region and exposed active site pocket. The active site residues could be identified and important variations were found among the CYP150A enzymes. Haem-binding azole inhibitors were identified for both enzymes. CONCLUSIONS: The structure of CYP150A6 will facilitate the identification of physiological substrates and the design of better inhibitors for members of this P450 family. Based on the observed differences in substrate binding preference and sequence variations among the active site residues, their roles are predicted to be different. GENERAL SIGNIFICANCE: Multiple CYP150 family members were found in many bacteria and are prevalent in the Mycobacteria including several human pathogens. Inhibition and structural data are reported here for these enzymes for the first time.

			The characterisation of two members of the cytochrome P450 CYP150 family: CYP150A5 and CYP150A6 from Mycobacterium marinum.,Child SA, Flint KL, Bruning JB, Bell SG Biochim Biophys Acta Gen Subj. 2019 Feb 28;1863(5):925-934. doi:, 10.1016/j.bbagen.2019.02.016. PMID:30826435<ref>PMID:30826435</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 6dcd" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Cytochrome P450 3D structures\|Cytochrome P450 3D structures]]		*[[Cytochrome P450 3D structures\|Cytochrome P450 3D structures]]
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 14:33, 13 March 2024

2024-03-13T14:33:45Z

← Older revision		Revision as of 14:33, 13 March 2024
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	<StructureSection load='6dcd' size='340' side='right'caption='[[6dcd]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='6dcd' size='340' side='right'caption='[[6dcd]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6dcd]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Mycmm Mycmm~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DCD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[6dcd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_marinum_M Mycobacterium marinum M]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DCD FirstGlance]. <br>
	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene~~></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.55Å</td></tr>
	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~cyp150A6, MMAR_4694 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=216594 MYCMM])~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dcd OCA], [~~http~~://pdbe.org/6dcd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6dcd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6dcd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6dcd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dcd OCA], [https://pdbe.org/6dcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dcd RCSB], [https://www.ebi.ac.uk/pdbsum/6dcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dcd ProSAT]</span></td></tr>
	</table>		</table>
	~~<div style="background-color:#fffaf0;">~~		== Function ==
	== ~~Publication Abstract from PubMed~~ ==		[https://www.uniprot.org/uniprot/B2HFD6_MYCMM B2HFD6_MYCMM]
	BACKGROUND: Actinobacteria, including the Mycobacteria, have a large component of cytochrome P450 family monooxygenases. This includes Mycobacterium tuberculosis, M. ulcerans and M. marinum, and M. vanbaalenii. These enzymes can abstract CH bonds and have important roles in natural product biosynthesis. METHODS: Two members of the bacterial CYP150 family, CYP150A5 and CYP150A6 from M. marinum, were produced, purified and characterised. The potential substrate ranges of both enzymes were analysed and the monooxygenase activity of CYP150A5 was reconstituted using a physiological electron transfer partner system. CYP150A6 was structurally characterised by X-ray crystallography. RESULTS: CYP150A5 was shown to bind various norisoprenoids and terpenoids. It could regioselectively hydroxylate beta-ionol. The X-ray crystal structure of substrate-free CYP150A6 was solved to 1.5A. This displayed an open conformation with short F and G helices, an unresolved F-G loop region and exposed active site pocket. The active site residues could be identified and important variations were found among the CYP150A enzymes. Haem-binding azole inhibitors were identified for both enzymes. CONCLUSIONS: The structure of CYP150A6 will facilitate the identification of physiological substrates and the design of better inhibitors for members of this P450 family. Based on the observed differences in substrate binding preference and sequence variations among the active site residues, their roles are predicted to be different. GENERAL SIGNIFICANCE: Multiple CYP150 family members were found in many bacteria and are prevalent in the Mycobacteria including several human pathogens. Inhibition and structural data are reported here for these enzymes for the first time.

	The characterisation of two members of the cytochrome P450 CYP150 family: CYP150A5 and CYP150A6 from Mycobacterium marinum.,Child SA, Flint KL, Bruning JB, Bell SG Biochim Biophys Acta Gen Subj. 2019 Feb 28;1863(5):925-934. doi:, 10.1016/j.bbagen.2019.02.016. PMID:30826435<ref>PMID:30826435</~~ref>~~

	~~From MEDLINE®~~/~~PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~
	</~~div>~~
	~~<div class="pdbe-citations 6dcd" style="background-color:#fffaf0;"><~~/~~div>~~

	==See Also==		==See Also==
	*[[Cytochrome P450 3D structures\|Cytochrome P450 3D structures]]		*[[Cytochrome P450 3D structures\|Cytochrome P450 3D structures]]
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Mycmm~~]]		[[Category: Mycobacterium marinum M]]
	[[Category: Bell~~, S G~~]]		[[Category: Bell SG]]
	[[Category: Bruning~~, J B~~]]		[[Category: Bruning JB]]
	[[Category: Child~~, S A]]~~		[[Category: Child SA]]
	~~[[Category: Cytochrome p450]]~~
	~~[[Category: Heme protein]]~~
	~~[[Category: Monooxygenase]]~~
	~~[[Category: Oxidoreductase~~]]

OCA at 10:59, 1 January 2020

2020-01-01T10:59:24Z

← Older revision		Revision as of 10:59, 1 January 2020
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	</div>		</div>
	<div class="pdbe-citations 6dcd" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6dcd" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Cytochrome P450 3D structures\|Cytochrome P450 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:00, 27 March 2019

2019-03-27T07:00:19Z

← Older revision		Revision as of 07:00, 27 March 2019
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	<StructureSection load='6dcd' size='340' side='right'caption='[[6dcd]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='6dcd' size='340' side='right'caption='[[6dcd]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6dcd]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[6dcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycmm Mycmm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DCD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cyp150A6, MMAR_4694 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=216594 MYCMM])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dcd OCA], [http://pdbe.org/6dcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dcd RCSB], [http://www.ebi.ac.uk/pdbsum/6dcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dcd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dcd OCA], [http://pdbe.org/6dcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dcd RCSB], [http://www.ebi.ac.uk/pdbsum/6dcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dcd ProSAT]</span></td></tr>
	</table>		</table>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
			[[Category: Mycmm]]
	[[Category: Bell, S G]]		[[Category: Bell, S G]]
	[[Category: Bruning, J B]]		[[Category: Bruning, J B]]

OCA at 07:47, 20 March 2019

2019-03-20T07:47:50Z

@@ Line 1: / Line 1: @@
-The entry 6dcd is ON HOLD  until Paper Publication
+==Mycobacterium marinum cytochrome P450 CYP150A6 in the substrate-free form==
-Authors:
+The characterisation of two members of the cytochrome P450 CYP150 family: CYP150A5 and CYP150A6 from Mycobacterium marinum.,Child SA, Flint KL, Bruning JB, Bell SG Biochim Biophys Acta Gen Subj. 2019 Feb 28;1863(5):925-934. doi:, 10.1016/j.bbagen.2019.02.016. PMID:30826435<ref>PMID:30826435</ref>
-Description:
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>

OCA at 04:03, 30 May 2018

2018-05-30T04:03:23Z

← Older revision		Revision as of 04:03, 30 May 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6dcd is ON HOLD		The entry 6dcd is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6dcd" [edit=sysop:move=sysop]

2018-05-16T04:05:24Z

Protected "6dcd" [edit=sysop:move=sysop]

← Older revision	Revision as of 04:05, 16 May 2018
(No difference)

OCA: New page: '''Unreleased structure''' The entry 6dcd is ON HOLD Authors: Description: Category: Unreleased Structures

2018-05-16T04:05:22Z

New page: '''Unreleased structure''' The entry 6dcd is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6dcd is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]