6e8a - Revision history

OCA at 14:39, 13 March 2024

2024-03-13T14:39:51Z

← Older revision		Revision as of 14:39, 13 March 2024
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	<StructureSection load='6e8a' size='340' side='right'caption='[[6e8a]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='6e8a' size='340' side='right'caption='[[6e8a]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6e8a]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6E8A OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6E8A FirstGlance]. <br>		<table><tr><td colspan='2'>[[6e8a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6E8A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6E8A FirstGlance]. <br>
	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~C4822_00510~~, ~~C4872_00325, DD95_06545 (~~[~~http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax~~.~~cgi?mode=Info&srchmode=5~~&~~id=90371 "Bacillus typhimurium" Loeffler 1892])~~</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.92Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6e8a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6e8a OCA], [~~http~~://pdbe.org/6e8a PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6e8a RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6e8a PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6e8a ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6e8a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6e8a OCA], [https://pdbe.org/6e8a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6e8a RCSB], [https://www.ebi.ac.uk/pdbsum/6e8a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6e8a ProSAT]</span></td></tr>
	</table>		</table>
	~~<div style="background-color:#fffaf0;">~~		== Function ==
	== ~~Publication Abstract from PubMed~~ ==		[https://www.uniprot.org/uniprot/Q7CPJ3_SALTY Q7CPJ3_SALTY] Plays a role in cell envelope biogenesis, maintenance of cell envelope integrity and membrane homeostasis. Essential for lipoprotein maturation under conditions where membrane fluidity may be altered.[HAMAP-Rule:MF_02248]
	~~DcrB is an 18kDa lipoprotein that contains a single domain of unknown function~~. ~~DcrB is found within Enterobacteriaceae, a family of Gram-negative bacteria which includes pathogens that can cause food-borne illness and hospital-acquired infections~~. In Salmonella enterica serovar Typhimurium, DcrB is up-regulated by conditions that promote the production of known virulence factors. We determined the structure of a truncated form of DcrB from Salmonella to 1.92A resolution by X-ray crystallography. This truncated form, DcrBDelta37, contains the entire domain of unknown function but lacks the lipoprotein signal sequence (residues 1-20) as well as residues 21-37. The DcrBDelta37 monomer contains the Mog1p/~~PsbP-like fold, which is found in functionally diverse proteins in mammals, yeast, plants, and cyanobacteria. Interestingly, DcrBDelta37 crystallized as~~ a ~~domain-swapped homodimer~~ in which the N-terminal beta-hairpin extends from one protomer to interact with the core of the second protomer. This domain-swapping indicates that the N-terminal portion of the Mog1p/PsbP-like fold likely has conformational flexibility. Overall, ~~our results provide the first example~~ of ~~an enterobacterial protein that contains the Mog1p/PsbP-like fold~~ and ~~expands knowledge of the structural and phylogenetic diversity of Mog1p/PsbP-like proteins~~.

	~~The structure of DcrB, a~~ lipoprotein from Salmonella enterica, reveals flexibility in the N-terminal segment of the Mog1p/PsbP-like fold.,Rasmussen DM, Soens RW, Davie TJ, Vaneerd CK, Bhattacharyya B, May JF J Struct Biol. 2018 Oct 16. pii: S1047-8477(18)30278-8. doi:, 10.1016/j.jsb.2018.10.005. PMID:30339832<ref>PMID:30339832</ref>

	~~From MEDLINE®/PubMed®, a database of the U.S~~. ~~National Library of Medicine.<br>~~
	~~</div>~~
	~~<div class="pdbe-citations 6e8a" style="background~~-~~color~~:~~#fffaf0;"></div>~~
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Bacillus typhimurium loeffler 1892]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Bhattacharyya, B~~]]		[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
	[[Category: ~~May, J F~~]]		[[Category: Bhattacharyya B]]
	[[Category: ~~Rasmussen, D M~~]]		[[Category: May JF]]
	[[Category: ~~Soens, R W~~]]		[[Category: Rasmussen DM]]
	[[Category: ~~Mog1/psbp-like fold lipoprotein]]~~		[[Category: Soens RW]]
	~~[[Category: Unknown function~~]]

OCA at 08:10, 21 May 2019

2019-05-21T08:10:15Z

← Older revision		Revision as of 08:10, 21 May 2019
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	==Crystal structure of DcrB from Salmonella enterica at 1.92 Angstroms resolution==		==Crystal structure of DcrB from Salmonella enterica at 1.92 Angstroms resolution==
	<StructureSection load='6e8a' size='340' side='right' caption='[[6e8a]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='6e8a' size='340' side='right'caption='[[6e8a]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6e8a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6E8A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6E8A FirstGlance]. <br>		<table><tr><td colspan='2'>[[6e8a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6E8A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6E8A FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus typhimurium loeffler 1892]]		[[Category: Bacillus typhimurium loeffler 1892]]
			[[Category: Large Structures]]
	[[Category: Bhattacharyya, B]]		[[Category: Bhattacharyya, B]]
	[[Category: May, J F]]		[[Category: May, J F]]

OCA at 08:38, 26 December 2018

2018-12-26T08:38:33Z

← Older revision		Revision as of 08:38, 26 December 2018
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	<StructureSection load='6e8a' size='340' side='right' caption='[[6e8a]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='6e8a' size='340' side='right' caption='[[6e8a]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6e8a]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6E8A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6E8A FirstGlance]. <br>		<table><tr><td colspan='2'>[[6e8a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6E8A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6E8A FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6e8a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6e8a OCA], [http://pdbe.org/6e8a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6e8a RCSB], [http://www.ebi.ac.uk/pdbsum/6e8a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6e8a ProSAT]</span></td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">C4822_00510, C4872_00325, DD95_06545 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 "Bacillus typhimurium" Loeffler 1892])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6e8a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6e8a OCA], [http://pdbe.org/6e8a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6e8a RCSB], [http://www.ebi.ac.uk/pdbsum/6e8a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6e8a ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Bacillus typhimurium loeffler 1892]]
	[[Category: Bhattacharyya, B]]		[[Category: Bhattacharyya, B]]
	[[Category: May, J F]]		[[Category: May, J F]]

OCA at 06:51, 31 October 2018

2018-10-31T06:51:26Z

@@ Line 1: / Line 1: @@
-The entry 6e8a is ON HOLD  until Paper Publication
+==Crystal structure of DcrB from Salmonella enterica at 1.92 Angstroms resolution==
-Authors:
+The structure of DcrB, a lipoprotein from Salmonella enterica, reveals flexibility in the N-terminal segment of the Mog1p/PsbP-like fold.,Rasmussen DM, Soens RW, Davie TJ, Vaneerd CK, Bhattacharyya B, May JF J Struct Biol. 2018 Oct 16. pii: S1047-8477(18)30278-8. doi:, 10.1016/j.jsb.2018.10.005. PMID:30339832<ref>PMID:30339832</ref>
-Description:
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>

OCA at 05:58, 12 September 2018

2018-09-12T05:58:10Z

← Older revision		Revision as of 05:58, 12 September 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6e8a is ON HOLD		The entry 6e8a is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6e8a" [edit=sysop:move=sysop]

2018-08-09T19:53:32Z

Protected "6e8a" [edit=sysop:move=sysop]

← Older revision	Revision as of 19:53, 9 August 2018
(No difference)

OCA: New page: '''Unreleased structure''' The entry 6e8a is ON HOLD Authors: Description: Category: Unreleased Structures

2018-08-09T19:53:30Z

New page: '''Unreleased structure''' The entry 6e8a is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6e8a is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]