6fbc - Revision history

OCA at 12:26, 9 May 2024

2024-05-09T12:26:34Z

← Older revision		Revision as of 12:26, 9 May 2024
Line 3:		Line 3:
	<StructureSection load='6fbc' size='340' side='right'caption='[[6fbc]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='6fbc' size='340' side='right'caption='[[6fbc]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6fbc]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_25104 Atcc 25104~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FBC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6FBC FirstGlance]. <br>		<table><tr><td colspan='2'>[[6fbc]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FBC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XG4:2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]GUANOSINE'>XG4</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.54Å</td></tr>
	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=D4B:'>D4B</scene></td></tr>~~		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D4B:[(2~{R},3~{S},5~{R})-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl+dihydrogen+phosphate'>D4B</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XG4:2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]GUANOSINE'>XG4</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">polA, pol1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=271 ATCC 25104])</td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fbc OCA], [https://pdbe.org/6fbc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fbc RCSB], [https://www.ebi.ac.uk/pdbsum/6fbc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fbc ProSAT]</span></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6fbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fbc OCA], [~~http~~://pdbe.org/6fbc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6fbc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6fbc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6fbc ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/DPO1_THEAQ DPO1_THEAQ]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Atcc 25104]]~~
	~~[[Category: DNA-directed DNA polymerase]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Diederichs, K~~]]		[[Category: Synthetic construct]]
	[[Category: ~~Kropp, H M~~]]		[[Category: Thermus aquaticus]]
	[[Category: ~~Marx, A~~]]		[[Category: Diederichs K]]
	[[Category: ~~Dna binding protein~~]]		[[Category: Kropp HM]]
	[[Category: ~~Dna polymerase]]~~		[[Category: Marx A]]
	~~[[Category: Klentaq]]~~
	~~[[Category: Klentaq dna polymerase]]~~
	~~[[Category: Modified nucleotide~~]]

OCA at 17:17, 14 August 2019

2019-08-14T17:17:50Z

← Older revision		Revision as of 17:17, 14 August 2019
Line 1:		Line 1:

	==KlenTaq DNA polymerase processing a modified primer - bearing the modification at the 3'-terminus of the primer.==		==KlenTaq DNA polymerase processing a modified primer - bearing the modification at the 3'-terminus of the primer.==
	<StructureSection load='6fbc' size='340' side='right' caption='[[6fbc]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='6fbc' size='340' side='right'caption='[[6fbc]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6fbc]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_25104 Atcc 25104]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FBC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FBC FirstGlance]. <br>		<table><tr><td colspan='2'>[[6fbc]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_25104 Atcc 25104]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FBC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FBC FirstGlance]. <br>
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 6fbc" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6fbc" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[DNA polymerase 3D structures\|DNA polymerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 25:		Line 28:
	[[Category: Atcc 25104]]		[[Category: Atcc 25104]]
	[[Category: DNA-directed DNA polymerase]]		[[Category: DNA-directed DNA polymerase]]
			[[Category: Large Structures]]
	[[Category: Diederichs, K]]		[[Category: Diederichs, K]]
	[[Category: Kropp, H M]]		[[Category: Kropp, H M]]

OCA at 08:36, 10 October 2018

2018-10-10T08:36:07Z

← Older revision		Revision as of 08:36, 10 October 2018
Line 3:		Line 3:
	<StructureSection load='6fbc' size='340' side='right' caption='[[6fbc]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='6fbc' size='340' side='right' caption='[[6fbc]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6fbc]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FBC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FBC FirstGlance]. <br>		<table><tr><td colspan='2'>[[6fbc]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_25104 Atcc 25104]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FBC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FBC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XG4:2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]GUANOSINE'>XG4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XG4:2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]GUANOSINE'>XG4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=D4B:'>D4B</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=D4B:'>D4B</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">polA, pol1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=271 ATCC 25104])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fbc OCA], [http://pdbe.org/6fbc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fbc RCSB], [http://www.ebi.ac.uk/pdbsum/6fbc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fbc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fbc OCA], [http://pdbe.org/6fbc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fbc RCSB], [http://www.ebi.ac.uk/pdbsum/6fbc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fbc ProSAT]</span></td></tr>
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Atcc 25104]]
	[[Category: DNA-directed DNA polymerase]]		[[Category: DNA-directed DNA polymerase]]
	[[Category: Diederichs, K]]		[[Category: Diederichs, K]]

OCA at 08:10, 26 September 2018

2018-09-26T08:10:56Z

@@ Line 1: / Line 1: @@
-The entry 6fbc is ON HOLD  until Paper Publication
+==KlenTaq DNA polymerase processing a modified primer - bearing the modification at the 3'-terminus of the primer.==
-Authors:
+Snapshots of a modified nucleotide moving through the confines of a DNA polymerase.,Kropp HM, Durr SL, Peter C, Diederichs K, Marx A Proc Natl Acad Sci U S A. 2018 Sep 17. pii: 1811518115. doi:, 10.1073/pnas.1811518115. PMID:30224478<ref>PMID:30224478</ref>
-Description:
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>

OCA at 07:16, 10 January 2018

2018-01-10T07:16:55Z

← Older revision		Revision as of 07:16, 10 January 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6fbc is ON HOLD		The entry 6fbc is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6fbc" [edit=sysop:move=sysop]

2017-12-27T07:31:33Z

Protected "6fbc" [edit=sysop:move=sysop]

← Older revision	Revision as of 07:31, 27 December 2017
(No difference)

OCA: New page: '''Unreleased structure''' The entry 6fbc is ON HOLD Authors: Description: Category: Unreleased Structures

2017-12-27T07:31:31Z

New page: '''Unreleased structure''' The entry 6fbc is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6fbc is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]