6jun - Revision history

OCA at 10:20, 22 November 2023

2023-11-22T10:20:04Z

← Older revision		Revision as of 10:20, 22 November 2023
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	<StructureSection load='6jun' size='340' side='right'caption='[[6jun]], [[Resolution\|resolution]] 2.51Å' scene=''>		<StructureSection load='6jun' size='340' side='right'caption='[[6jun]], [[Resolution\|resolution]] 2.51Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6jun]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JUN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JUN FirstGlance]. <br>		<table><tr><td colspan='2'>[[6jun]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycolicibacterium_smegmatis Mycolicibacterium smegmatis] and [https://en.wikipedia.org/wiki/Mycolicibacterium_smegmatis_MC2_155 Mycolicibacterium smegmatis MC2 155]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JUN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JUN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0KX:2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]CYTIDINE'>0KX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene~~></td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.51Å</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0KX:2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]CYTIDINE'>0KX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jun OCA], [~~http~~://pdbe.org/6jun PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jun RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jun PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jun ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jun OCA], [https://pdbe.org/6jun PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jun RCSB], [https://www.ebi.ac.uk/pdbsum/6jun PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jun ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[~~[http~~://www.uniprot.org/uniprot/A0QR77_MYCS2 A0QR77_MYCS2]] Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII (By similarity).[HAMAP-Rule:MF_01113]		[https://www.uniprot.org/uniprot/A0QR77_MYCS2 A0QR77_MYCS2] Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII (By similarity).[HAMAP-Rule:MF_01113]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6jun" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6jun" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[DNA polymerase 3D structures\|DNA polymerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: DNA-directed DNA polymerase]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Johnson, M K~~]]		[[Category: Mycolicibacterium smegmatis]]
	[[Category: ~~Nair, D T~~]]		[[Category: Mycolicibacterium smegmatis MC2 155]]
	[[Category: ~~Dna polymerase~~]]		[[Category: Johnson MK]]
	[[Category: ~~Replication]]~~		[[Category: Nair DT]]
	~~[[Category: Replication-dna complex~~]]

OCA at 06:18, 19 February 2020

2020-02-19T06:18:48Z

@@ Line 1: / Line 1: @@
-The entry 6jun is ON HOLD  until Paper Publication
+==MsDpo4-DNA complex 3==
-Authors:
+A polar filter in DNA polymerases prevents ribonucleotide incorporation.,Johnson MK, Kottur J, Nair DT Nucleic Acids Res. 2019 Nov 18;47(20):10693-10705. doi: 10.1093/nar/gkz792. PMID:31544946<ref>PMID:31544946</ref>
-Description:
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>

OCA at 04:02, 19 June 2019

2019-06-19T04:02:11Z

← Older revision		Revision as of 04:02, 19 June 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6jun is ON HOLD		The entry 6jun is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6jun" [edit=sysop:move=sysop]

2019-04-24T04:45:34Z

Protected "6jun" [edit=sysop:move=sysop]

← Older revision	Revision as of 04:45, 24 April 2019
(No difference)

OCA: New page: '''Unreleased structure''' The entry 6jun is ON HOLD Authors: Description: Category: Unreleased Structures

2019-04-24T04:45:32Z

New page: '''Unreleased structure''' The entry 6jun is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6jun is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]