6m4e - Revision history

OCA at 11:11, 30 October 2024

2024-10-30T11:11:39Z

← Older revision		Revision as of 11:11, 30 October 2024
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	<StructureSection load='6m4e' size='340' side='right'caption='[[6m4e]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='6m4e' size='340' side='right'caption='[[6m4e]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>~~[[6m4e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hamamotoa_singularis Hamamotoa singularis].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M4E FirstGlance]. <br>		<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M4E FirstGlance]. <br>
	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4e OCA], [https://pdbe.org/6m4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m4e RCSB], [https://www.ebi.ac.uk/pdbsum/6m4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4e ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4e OCA], [https://pdbe.org/6m4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m4e RCSB], [https://www.ebi.ac.uk/pdbsum/6m4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4e ProSAT]</span></td></tr>
	</table>		</table>
	~~== Function ==~~
	~~[https://www.uniprot.org/uniprot/Q564N5_9BASI Q564N5_9BASI]~~
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	~~[[Category: Hamamotoa singularis]]~~
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Aoki S]]		[[Category: Aoki S]]

OCA at 15:14, 29 November 2023

2023-11-29T15:14:55Z

← Older revision		Revision as of 15:14, 29 November 2023
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	<StructureSection load='6m4e' size='340' side='right'caption='[[6m4e]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='6m4e' size='340' side='right'caption='[[6m4e]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6m4e]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_24193 Atcc 24193~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4E OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6M4E FirstGlance]. <br>		<table><tr><td colspan='2'>[[6m4e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hamamotoa_singularis Hamamotoa singularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M4E FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>~~</td></tr>~~		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bglA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5445 ATCC 24193])~~</td></tr>		<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6m4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4e OCA], [~~http~~://pdbe.org/6m4e PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6m4e RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6m4e PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4e ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4e OCA], [https://pdbe.org/6m4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m4e RCSB], [https://www.ebi.ac.uk/pdbsum/6m4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4e ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q564N5_9BASI Q564N5_9BASI]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6m4e" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6m4e" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Galactosidase 3D structures\|Galactosidase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: ~~Atcc 24193~~]]		[[Category: Hamamotoa singularis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Aoki, S]]		[[Category: Aoki S]]
	[[Category: Iwamoto, R]]		[[Category: Iwamoto R]]
	[[Category: Matsumura, H]]		[[Category: Matsumura H]]
	[[Category: Takano, K]]		[[Category: Takano K]]
	[[Category: Tanaka, S i]]		[[Category: Tanaka S-i]]
	[[Category: Uehara, R]]		[[Category: Uehara R]]
	[[Category: Yoshizawa, T]]		[[Category: Yoshizawa T]]
	~~[[Category: Beta-galactosidase]]~~
	~~[[Category: Beta-glucosidase]]~~
	~~[[Category: Galactooligosaccharide]]~~
	~~[[Category: Hamamotoa singulari]]~~
	~~[[Category: Hydrolase]]~~
	~~[[Category: Structural protein]]~~
	~~[[Category: Transgalactosylation~~]]

OCA at 12:42, 16 December 2020

2020-12-16T12:42:07Z

← Older revision		Revision as of 12:42, 16 December 2020
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	==Crystal structure of a GH1 beta-glucosidase from Hamamotoa singularis==		==Crystal structure of a GH1 beta-glucosidase from Hamamotoa singularis==
	<StructureSection load='6m4e' size='340' side='right'caption='[[6m4e]]' scene=''>		<StructureSection load='6m4e' size='340' side='right'caption='[[6m4e]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4E OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6M4E FirstGlance]. <br>		<table><tr><td colspan='2'>[[6m4e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_24193 Atcc 24193]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4E OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6M4E FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6m4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4e OCA], [http://pdbe.org/6m4e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m4e RCSB], [http://www.ebi.ac.uk/pdbsum/6m4e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4e ProSAT]</span></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
			<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bglA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5445 ATCC 24193])</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6m4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4e OCA], [http://pdbe.org/6m4e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m4e RCSB], [http://www.ebi.ac.uk/pdbsum/6m4e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4e ProSAT]</span></td></tr>
	</table>		</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			A GH1 beta-glucosidase from the fungus Hamamotoa singularis (HsBglA) has high transgalactosylation activity and efficiently converts lactose to galactooligosaccharides. Consequently, HsBglA is among the most widely used enzymes for industrial galactooligosaccharide production. Here, we present the first crystal structures of HsBglA with and without 4'-galactosyllactose, a tri-galactooligosaccharide, at 3.0 and 2.1 A resolutions, respectively. These structures reveal details of the structural elements that define the catalytic activity and substrate binding of HsBglA, and provide a possible interpretation for its high catalytic potency for transgalactosylation reaction.

			Crystal structure of a GH1 beta-glucosidase from Hamamotoa singularis.,Uehara R, Iwamoto R, Aoki S, Yoshizawa T, Takano K, Matsumura H, Tanaka SI Protein Sci. 2020 Jul 26. doi: 10.1002/pro.3916. PMID:32713015<ref>PMID:32713015</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 6m4e" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Atcc 24193]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Aoki S]]		[[Category: Aoki, S]]
	[[Category: Iwamoto R]]		[[Category: Iwamoto, R]]
	[[Category: Matsumura H]]		[[Category: Matsumura, H]]
	[[Category: Takano K]]		[[Category: Takano, K]]
	[[Category: Tanaka S-i]]		[[Category: Tanaka, S i]]
	[[Category: Uehara R]]		[[Category: Uehara, R]]
	[[Category: Yoshizawa T]]		[[Category: Yoshizawa, T]]
			[[Category: Beta-galactosidase]]
			[[Category: Beta-glucosidase]]
			[[Category: Galactooligosaccharide]]
			[[Category: Hamamotoa singulari]]
			[[Category: Hydrolase]]
			[[Category: Structural protein]]
			[[Category: Transgalactosylation]]

OCA at 06:47, 2 September 2020

2020-09-02T06:47:31Z

← Older revision		Revision as of 06:47, 2 September 2020
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	~~'''Unreleased structure'''~~

	~~The entry~~ 6m4e is ~~ON HOLD until Paper Publication~~		==Crystal structure of a GH1 beta-glucosidase from Hamamotoa singularis==
			<StructureSection load='6m4e' size='340' side='right'caption='[[6m4e]]' scene=''>
	~~Authors~~:		== Structural highlights ==
			<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M4E OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6M4E FirstGlance]. <br>
	~~Description~~:		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6m4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m4e OCA], [http://pdbe.org/6m4e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m4e RCSB], [http://www.ebi.ac.uk/pdbsum/6m4e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m4e ProSAT]</span></td></tr>
	[[Category: ~~Unreleased Structures~~]]		</table>
			__TOC__
			</StructureSection>
			[[Category: Large Structures]]
			[[Category: Aoki S]]
			[[Category: Iwamoto R]]
			[[Category: Matsumura H]]
			[[Category: Takano K]]
			[[Category: Tanaka S-i]]
			[[Category: Uehara R]]
			[[Category: Yoshizawa T]]

OCA at 09:03, 26 August 2020

2020-08-26T09:03:01Z

← Older revision		Revision as of 09:03, 26 August 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6m4e is ON HOLD		The entry 6m4e is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 08:05, 12 August 2020

2020-08-12T08:05:53Z

← Older revision		Revision as of 08:05, 12 August 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6m4e is ON HOLD ~~until Paper Publication~~		The entry 6m4e is ON HOLD

	Authors:		Authors:

OCA at 04:08, 22 April 2020

2020-04-22T04:08:45Z

← Older revision		Revision as of 04:08, 22 April 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6m4e is ON HOLD		The entry 6m4e is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6m4e" [edit=sysop:move=sysop]

2020-03-18T08:17:26Z

Protected "6m4e" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:17, 18 March 2020
(No difference)

OCA: New page: '''Unreleased structure''' The entry 6m4e is ON HOLD Authors: Description: Category: Unreleased Structures

2020-03-18T08:17:25Z

New page: '''Unreleased structure''' The entry 6m4e is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6m4e is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]