OCA at 07:36, 11 October 2023

2023-10-11T07:36:33Z

← Older revision		Revision as of 07:36, 11 October 2023
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	====		==The structure of NTMT1 in complex with compound 6==
	<StructureSection load='6pvb' size='340' side='right'caption='[[6pvb]]' scene=''>		<StructureSection load='6pvb' size='340' side='right'caption='[[6pvb]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>		<table><tr><td colspan='2'>[[6pvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PVB FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6pvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pvb OCA], [~~http~~://pdbe.org/6pvb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6pvb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6pvb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6pvb ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLZ:AMINO-ACETALDEHYDE'>GLZ</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=P2J:9-(5-{[(3S)-3-amino-3-carboxypropyl](pentyl)amino}-5-deoxy-beta-L-arabinofuranosyl)-9H-purin-6-amine'>P2J</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6pvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pvb OCA], [https://pdbe.org/6pvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6pvb RCSB], [https://www.ebi.ac.uk/pdbsum/6pvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6pvb ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/NTM1A_HUMAN NTM1A_HUMAN] Distributive alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Some of the substrates may be primed by METTL11B-mediated monomethylation. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1.<ref>PMID:20481588</ref> <ref>PMID:20668449</ref> <ref>PMID:24090352</ref>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The bisubstrate analogue strategy is a promising approach to develop potent and selective inhibitors for protein methyltransferases. Herein, the interactions of a series of bisubstrate analogues with protein N-terminal methyltransferase 1 (NTMT1) were examined to probe the molecular properties of the active site of NTMT1. Our results indicate that a 2-C to 4-C atom linker enables its respective bisubstrate analogue to occupy both substrate- and cofactor-binding sites of NTMT1, but the bisubstrate analogue with a 5-C atom linker only interacts with the substrate-binding site and functions as a substrate. Furthermore, the 4-C atom linker is the optimal and produces the most potent inhibitor (Ki,app = 130 +/- 40 pM) for NTMT1 to date, displaying more than 3000-fold selectivity for other methyltransferases and even for its homologue NTMT2. This study reveals the molecular basis for the plasticity of the active site of NTMT1. Additionally, our study outlines general guidance on the development of bisubstrate inhibitors for any methyltransferases.

			Probing the Plasticity in the Active Site of Protein N-terminal Methyltransferase 1 Using Bisubstrate Analogues.,Chen D, Dong C, Dong G, Srinivasan K, Min J, Noinaj N, Huang R J Med Chem. 2020 Aug 13;63(15):8419-8431. doi: 10.1021/acs.jmedchem.0c00770. Epub, 2020 Jul 16. PMID:32605369<ref>PMID:32605369</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 6pvb" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Z-disk~~]]		[[Category: Synthetic construct]]
			[[Category: Chen D]]
			[[Category: Huang R]]
			[[Category: Noinaj N]]

OCA at 06:18, 19 August 2020

2020-08-19T06:18:23Z

← Older revision		Revision as of 06:18, 19 August 2020
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	~~'''Unreleased structure'''~~

	~~The entry~~ 6pvb is ~~ON HOLD~~		====
			<StructureSection load='6pvb' size='340' side='right'caption='[[6pvb]]' scene=''>
	~~Authors:~~		== Structural highlights ==
			<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
	~~Description~~:		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6pvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pvb OCA], [http://pdbe.org/6pvb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6pvb RCSB], [http://www.ebi.ac.uk/pdbsum/6pvb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6pvb ProSAT]</span></td></tr>
	[[Category: ~~Unreleased Structures~~]]		</table>
			__TOC__
			</StructureSection>
			[[Category: Large Structures]]
			[[Category: Z-disk]]

OCA at 05:48, 22 July 2020

2020-07-22T05:48:39Z

← Older revision		Revision as of 05:48, 22 July 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6pvb is ON HOLD ~~until Paper Publication~~		The entry 6pvb is ON HOLD

	Authors:		Authors:

OCA at 13:45, 28 August 2019

2019-08-28T13:45:29Z

← Older revision		Revision as of 13:45, 28 August 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 6pvb is ON HOLD		The entry 6pvb is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6pvb" [edit=sysop:move=sysop]

2019-07-31T04:46:05Z

Protected "6pvb" [edit=sysop:move=sysop]

← Older revision	Revision as of 04:46, 31 July 2019
(No difference)

OCA: New page: '''Unreleased structure''' The entry 6pvb is ON HOLD Authors: Description: Category: Unreleased Structures

2019-07-31T04:46:04Z

New page: '''Unreleased structure''' The entry 6pvb is ON HOLD Authors: Description: Category: Unreleased Structures

New page