7bot - Revision history

OCA at 15:23, 29 November 2023

2023-11-29T15:23:19Z

← Older revision		Revision as of 15:23, 29 November 2023
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	====		==Human SIRT2 in complex with myristoyl thiourea inhibitor, No.23==
	<StructureSection load='7bot' size='340' side='right'caption='[[7bot]]' scene=''>		<StructureSection load='7bot' size='340' side='right'caption='[[7bot]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>		<table><tr><td colspan='2'>[[7bot]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BOT FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bot OCA], [https://pdbe.org/7bot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bot RCSB], [https://www.ebi.ac.uk/pdbsum/7bot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bot ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AIB:ALPHA-AMINOISOBUTYRIC+ACID'>AIB</scene>, <scene name='pdbligand=F4R:N-dodecylmethanethioamide'>F4R</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=P6S:benzyl+hydrogen+carbonate'>P6S</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bot OCA], [https://pdbe.org/7bot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bot RCSB], [https://www.ebi.ac.uk/pdbsum/7bot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bot ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/SIR2_HUMAN SIR2_HUMAN] NAD-dependent protein deacetylase, which deacetylates internal lysines on histone and non-histone proteins. Deacetylates 'Lys-40' of alpha-tubulin. Involved in the control of mitotic exit in the cell cycle, probably via its role in the regulation of cytoskeleton. Deacetylates PCK1, opposing proteasomal degradation. Deacetylates 'Lys-310' of RELA.<ref>PMID:12620231</ref> <ref>PMID:12697818</ref> <ref>PMID:21081649</ref> <ref>PMID:21726808</ref>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Sirtuin 2 (SIRT2) is a protein deacylase enzyme that removes acetyl groups and longer chain acyl groups from post-translationally modified lysine residues. It affects diverse biological functions in the cell and has been considered a drug target in relation to both neurodegenerative diseases and cancer. Therefore, access to well-characterized and robust tool compounds is essential for the continued investigation of the complex functions of this enzyme. Here, we report a collection of chemical probes that are potent, selective, stable in serum, water-soluble, and inhibit SIRT2-mediated deacetylation and demyristoylation in cells. Compared to the current landscape of SIRT2 inhibitors, this is a unique ensemble of features built into a single compound. We expect the developed chemotypes to find broad application in the interrogation of SIRT2 functions in both healthy and diseased cells, and to provide a foundation for the development of future therapeutics.

			Mechanism-based inhibitors of SIRT2: structure-activity relationship, X-ray structures, target engagement, regulation of alpha-tubulin acetylation and inhibition of breast cancer cell migration.,Nielsen AL, Rajabi N, Kudo N, Lundo K, Moreno-Yruela C, Baek M, Fontenas M, Lucidi A, Madsen AS, Yoshida M, Olsen CA RSC Chem Biol. 2021 Jan 14;2(2):612-626. doi: 10.1039/d0cb00036a. eCollection , 2021 Apr 1. PMID:34458803<ref>PMID:34458803</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 7bot" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Histone deacetylase 3D structures\|Histone deacetylase 3D structures]]
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Z-disk~~]]		[[Category: Synthetic construct]]
			[[Category: Kudo N]]
			[[Category: Minoru Y]]
			[[Category: Olsen CA]]

OCA at 06:39, 24 March 2021

2021-03-24T06:39:46Z

← Older revision		Revision as of 06:39, 24 March 2021
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	~~'''Unreleased structure'''~~

	~~The entry~~ 7bot ~~is ON HOLD until Paper Publication~~		====
			<StructureSection load='7bot' size='340' side='right'caption='[[7bot]]' scene=''>
	~~Authors~~: ~~Kudo, N~~.~~, Olsen, C~~.A.~~, Minoru, Y~~.		== Structural highlights ==
			<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
	~~Description~~: ~~Human SIRT2 in complex with myristoyl thiourea inhibitor, No~~.23		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bot OCA], [https://pdbe.org/7bot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bot RCSB], [https://www.ebi.ac.uk/pdbsum/7bot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bot ProSAT]</span></td></tr>
	[[~~Category~~: ~~Unreleased Structures~~]]		</table>
	[[~~Category~~: ~~Kudo~~, N]]		__TOC__
	[[Category: ~~Minoru, Y~~]]		</StructureSection>
	[[Category: ~~Olsen, C.A~~]]		[[Category: Large Structures]]
			[[Category: Z-disk]]

OCA at 14:26, 10 March 2021

2021-03-10T14:26:49Z

← Older revision		Revision as of 14:26, 10 March 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 7bot is ON HOLD		The entry 7bot is ON HOLD until Paper Publication

	Authors: Kudo, N., Olsen, C.A., Minoru, Y.		Authors: Kudo, N., Olsen, C.A., Minoru, Y.

	Description: Human SIRT2 in complex with myristoyl thiourea inhibitor, No. 23		Description: Human SIRT2 in complex with myristoyl thiourea inhibitor, No.23
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	~~[[Category: Olsen, C.A]]~~
	[[Category: Kudo, N]]		[[Category: Kudo, N]]
	[[Category: Minoru, Y]]		[[Category: Minoru, Y]]
			[[Category: Olsen, C.A]]

OCA: Protected "7bot" [edit=sysop:move=sysop]

2020-03-27T08:41:53Z

Protected "7bot" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:41, 27 March 2020
(No difference)

OCA: New page: '''Unreleased structure''' The entry 7bot is ON HOLD Authors: Kudo, N., Olsen, C.A., Minoru, Y. Description: Human SIRT2 in complex with myristoyl thiourea inhibitor, No. 23 [[Category...

2020-03-27T08:41:52Z

New page: '''Unreleased structure''' The entry 7bot is ON HOLD Authors: Kudo, N., Olsen, C.A., Minoru, Y. Description: Human SIRT2 in complex with myristoyl thiourea inhibitor, No. 23 [[Category...

New page

'''Unreleased structure'''

The entry 7bot is ON HOLD

Authors: Kudo, N., Olsen, C.A., Minoru, Y.

Description: Human SIRT2 in complex with myristoyl thiourea inhibitor, No. 23
[[Category: Unreleased Structures]]
[[Category: Olsen, C.A]]
[[Category: Kudo, N]]
[[Category: Minoru, Y]]