OCA at 12:32, 17 July 2024

2024-07-17T12:32:13Z

← Older revision		Revision as of 12:32, 17 July 2024
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	====		==cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local refinement==
	<StructureSection load='7pec' size='340' side='right'caption='[[7pec]]' scene=''>		<StructureSection load='7pec' size='340' side='right'caption='[[7pec]], [[Resolution\|resolution]] 4.24Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>		<table><tr><td colspan='2'>[[7pec]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PEC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PEC FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pec OCA], [https://pdbe.org/7pec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pec RCSB], [https://www.ebi.ac.uk/pdbsum/7pec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pec ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 4.24Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IHP:INOSITOL+HEXAKISPHOSPHATE'>IHP</scene></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pec OCA], [https://pdbe.org/7pec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pec RCSB], [https://www.ebi.ac.uk/pdbsum/7pec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pec ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[https://www.uniprot.org/uniprot/MTOR_HUMAN MTOR_HUMAN] Serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. Functions as part of 2 structurally and functionally distinct signaling complexes mTORC1 and mTORC2 (mTOR complex 1 and 2). Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. This includes phosphorylation of EIF4EBP1 and release of its inhibition toward the elongation initiation factor 4E (eiF4E). Moreover, phosphorylates and activates RPS6KB1 and RPS6KB2 that promote protein synthesis by modulating the activity of their downstream targets including ribosomal protein S6, eukaryotic translation initiation factor EIF4B and the inhibitor of translation initiation PDCD4. Regulates ribosome synthesis by activating RNA polymerase III-dependent transcription through phosphorylation and inhibition of MAF1 a RNA polymerase III-repressor. In parallel to protein synthesis, also regulates lipid synthesis through SREBF1/SREBP1 and LPIN1. To maintain energy homeostasis mTORC1 may also regulate mitochondrial biogenesis through regulation of PPARGC1A. mTORC1 also negatively regulates autophagy through phosphorylation of ULK1. Under nutrient sufficiency, phosphorylates ULK1 at 'Ser-758', disrupting the interaction with AMPK and preventing activation of ULK1. Also prevents autophagy through phosphorylation of the autophagy inhibitor DAP. mTORC1 exerts a feedback control on upstream growth factor signaling that includes phosphorylation and activation of GRB10 a INSR-dependent signaling suppressor. Among other potential targets mTORC1 may phosphorylate CLIP1 and regulate microtubules. As part of the mTORC2 complex MTOR may regulate other cellular processes including survival and organization of the cytoskeleton. Plays a critical role in the phosphorylation at 'Ser-473' of AKT1, a pro-survival effector of phosphoinositide 3-kinase, facilitating its activation by PDK1. mTORC2 may regulate the actin cytoskeleton, through phosphorylation of PRKCA, PXN and activation of the Rho-type guanine nucleotide exchange factors RHOA and RAC1A or RAC1B. mTORC2 also regulates the phosphorylation of SGK1 at 'Ser-422'.<ref>PMID:12150925</ref> <ref>PMID:12150926</ref> <ref>PMID:12231510</ref> <ref>PMID:12087098</ref> <ref>PMID:14651849</ref> <ref>PMID:12718876</ref> <ref>PMID:15268862</ref> <ref>PMID:15545625</ref> <ref>PMID:15467718</ref> <ref>PMID:15718470</ref> <ref>PMID:18925875</ref> <ref>PMID:18762023</ref> <ref>PMID:18497260</ref> <ref>PMID:20537536</ref> <ref>PMID:20516213</ref> <ref>PMID:21659604</ref>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The vertebrate-specific DEP domain-containing mTOR interacting protein (DEPTOR), an oncoprotein or tumor suppressor, has important roles in metabolism, immunity, and cancer. It is the only protein that binds and regulates both complexes of mammalian target of rapamycin (mTOR), a central regulator of cell growth. Biochemical analysis and cryo-EM reconstructions of DEPTOR bound to human mTOR complex 1 (mTORC1) and mTORC2 reveal that both structured regions of DEPTOR, the PDZ domain and the DEP domain tandem (DEPt), are involved in mTOR interaction. The PDZ domain binds tightly with mildly activating effect, but then acts as an anchor for DEPt association that allosterically suppresses mTOR activation. The binding interfaces of the PDZ domain and DEPt also support further regulation by other signaling pathways. A separate, substrate-like mode of interaction for DEPTOR phosphorylation by mTOR complexes rationalizes inhibition of non-stimulated mTOR activity at higher DEPTOR concentrations. The multifaceted interplay between DEPTOR and mTOR provides a basis for understanding the divergent roles of DEPTOR in physiology and opens new routes for targeting the mTOR-DEPTOR interaction in disease.

			Regulation of human mTOR complexes by DEPTOR.,Walchli M, Berneiser K, Mangia F, Imseng S, Craigie LM, Stuttfeld E, Hall MN, Maier T Elife. 2021 Sep 14;10. pii: 70871. doi: 10.7554/eLife.70871. PMID:34519268<ref>PMID:34519268</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 7pec" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Raptor 3D structures\|Raptor 3D structures]]
			*[[Serine/threonine protein kinase 3D structures\|Serine/threonine protein kinase 3D structures]]
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Z-disk~~]]		[[Category: Maier T]]
			[[Category: Waelchli M]]

OCA at 08:59, 8 September 2021

2021-09-08T08:59:26Z

← Older revision		Revision as of 08:59, 8 September 2021
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	~~'''Unreleased structure'''~~

	~~The entry~~ 7pec ~~is ON HOLD until Paper Publication~~		====
			<StructureSection load='7pec' size='340' side='right'caption='[[7pec]]' scene=''>
	~~Authors~~: ~~Waelchli, M~~.~~, Maier, T~~.		== Structural highlights ==
			<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
	~~Description~~: ~~cryo~~-~~EM structure of DEPTOR bound to human mTOR complex 1~~, ~~DEPt-bound subset local refinement~~		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pec OCA], [https://pdbe.org/7pec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pec RCSB], [https://www.ebi.ac.uk/pdbsum/7pec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pec ProSAT]</span></td></tr>
	[[~~Category~~: ~~Unreleased Structures~~]]		</table>
	[[Category: ~~Maier, T~~]]		__TOC__
	[[Category: ~~Waelchli, M~~]]		</StructureSection>
			[[Category: Large Structures]]
			[[Category: Z-disk]]

OCA at 05:09, 25 August 2021

2021-08-25T05:09:59Z

← Older revision		Revision as of 05:09, 25 August 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 7pec is ON HOLD		The entry 7pec is ON HOLD until Paper Publication

	Authors: Waelchli, M., Maier, T.		Authors: Waelchli, M., Maier, T.

OCA: Protected "7pec" [edit=sysop:move=sysop]

2021-08-18T05:02:08Z

Protected "7pec" [edit=sysop:move=sysop]

← Older revision	Revision as of 05:02, 18 August 2021
(No difference)

OCA: New page: '''Unreleased structure''' The entry 7pec is ON HOLD Authors: Waelchli, M., Maier, T. Description: cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local re...

2021-08-18T05:02:07Z

New page: '''Unreleased structure''' The entry 7pec is ON HOLD Authors: Waelchli, M., Maier, T. Description: cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local re...

New page

'''Unreleased structure'''

The entry 7pec is ON HOLD

Authors: Waelchli, M., Maier, T.

Description: cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local refinement
[[Category: Unreleased Structures]]
[[Category: Maier, T]]
[[Category: Waelchli, M]]

7pec - Revision history

OCA at 12:32, 17 July 2024

OCA at 08:59, 8 September 2021

OCA at 05:09, 25 August 2021

OCA: Protected "7pec" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7pec is ON HOLD Authors: Waelchli, M., Maier, T. Description: cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local re...