7rob - Revision history

OCA at 05:48, 5 June 2024

2024-06-05T05:48:01Z

← Older revision		Revision as of 05:48, 5 June 2024
Line 3:		Line 3:
	<StructureSection load='7rob' size='340' side='right'caption='[[7rob]], [[Resolution\|resolution]] 3.90Å' scene=''>		<StructureSection load='7rob' size='340' side='right'caption='[[7rob]], [[Resolution\|resolution]] 3.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>~~[[7rob]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_monocaudavirus_smv1 Sulfolobus monocaudavirus smv1].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ROB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ROB FirstGlance]. <br>		<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ROB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ROB FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rob OCA], [https://pdbe.org/7rob PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rob RCSB], [https://www.ebi.ac.uk/pdbsum/7rob PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rob ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.9Å</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rob OCA], [https://pdbe.org/7rob PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rob RCSB], [https://www.ebi.ac.uk/pdbsum/7rob PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rob ProSAT]</span></td></tr>
	</table>		</table>
	~~<div style="background-color:#fffaf0;">~~
	~~== Publication Abstract from PubMed ==~~
	Spindle- or lemon-shaped viruses infect archaea in diverse environments. Due to the highly pleomorphic nature of these virions, which can be found with cylindrical tails emanating from the spindle-shaped body, structural studies of these capsids have been challenging. We have determined the atomic structure of the capsid of Sulfolobus monocaudavirus 1, a virus that infects hosts living in nearly boiling acid. A highly hydrophobic protein, likely integrated into the host membrane before the virions assemble, forms 7 strands that slide past each other in both the tails and the spindle body. We observe the discrete steps that occur as the tail tubes expand, and these are due to highly conserved quasiequivalent interactions with neighboring subunits maintained despite significant diameter changes. Our results show how helical assemblies can vary their diameters, becoming nearly spherical to package a larger genome and suggest how all spindle-shaped viruses have evolved from archaeal rod-like viruses.

	Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.,Wang F, Cvirkaite-Krupovic V, Vos M, Beltran LC, Kreutzberger MAB, Winter JM, Su Z, Liu J, Schouten S, Krupovic M, Egelman EH Cell. 2022 Mar 17. pii: S0092-8674(22)00199-4. doi: 10.1016/j.cell.2022.02.019. PMID:35325592<ref>PMID:35325592</ref>

	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~
	~~</div>~~
	~~<div class="pdbe-citations 7rob" style="background-color:#fffaf0;"></div>~~
	~~== References ==~~
	~~<references/>~~
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	~~[[Category: Sulfolobus monocaudavirus smv1]]~~		[[Category: Cvirkaite-Krupovic V]]
	[[Category: Cvirkaite-Krupovic, V]]		[[Category: Egelman EH]]
	[[Category: Egelman~~, E H~~]]		[[Category: Krupovic M]]
	[[Category: Krupovic, M]]		[[Category: Wang F]]
	[[Category: Wang, F]]
	~~[[Category: Archaeal virus]]~~
	~~[[Category: Helical symmetry]]~~
	~~[[Category: Lemon-shaped virus]]~~
	~~[[Category: Spindle-shaped virus]]~~
	~~[[Category: Virus~~]]

OCA at 10:36, 6 April 2022

2022-04-06T10:36:58Z

← Older revision		Revision as of 10:36, 6 April 2022
Line 1:		Line 1:

	==Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6==		==Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6==
	<StructureSection load='7rob' size='340' side='right'caption='[[7rob]]' scene=''>		<StructureSection load='7rob' size='340' side='right'caption='[[7rob]], [[Resolution\|resolution]] 3.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ROB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ROB FirstGlance]. <br>		<table><tr><td colspan='2'>[[7rob]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_monocaudavirus_smv1 Sulfolobus monocaudavirus smv1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ROB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ROB FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rob OCA], [https://pdbe.org/7rob PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rob RCSB], [https://www.ebi.ac.uk/pdbsum/7rob PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rob ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rob OCA], [https://pdbe.org/7rob PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rob RCSB], [https://www.ebi.ac.uk/pdbsum/7rob PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rob ProSAT]</span></td></tr>
	</table>		</table>
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Spindle- or lemon-shaped viruses infect archaea in diverse environments. Due to the highly pleomorphic nature of these virions, which can be found with cylindrical tails emanating from the spindle-shaped body, structural studies of these capsids have been challenging. We have determined the atomic structure of the capsid of Sulfolobus monocaudavirus 1, a virus that infects hosts living in nearly boiling acid. A highly hydrophobic protein, likely integrated into the host membrane before the virions assemble, forms 7 strands that slide past each other in both the tails and the spindle body. We observe the discrete steps that occur as the tail tubes expand, and these are due to highly conserved quasiequivalent interactions with neighboring subunits maintained despite significant diameter changes. Our results show how helical assemblies can vary their diameters, becoming nearly spherical to package a larger genome and suggest how all spindle-shaped viruses have evolved from archaeal rod-like viruses.

			Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.,Wang F, Cvirkaite-Krupovic V, Vos M, Beltran LC, Kreutzberger MAB, Winter JM, Su Z, Liu J, Schouten S, Krupovic M, Egelman EH Cell. 2022 Mar 17. pii: S0092-8674(22)00199-4. doi: 10.1016/j.cell.2022.02.019. PMID:35325592<ref>PMID:35325592</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 7rob" style="background-color:#fffaf0;"></div>
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Cvirkaite-Krupovic V]]		[[Category: Sulfolobus monocaudavirus smv1]]
	[[Category: Egelman EH]]		[[Category: Cvirkaite-Krupovic, V]]
	[[Category: Krupovic M]]		[[Category: Egelman, E H]]
	[[Category: Wang F]]		[[Category: Krupovic, M]]
			[[Category: Wang, F]]
			[[Category: Archaeal virus]]
			[[Category: Helical symmetry]]
			[[Category: Lemon-shaped virus]]
			[[Category: Spindle-shaped virus]]
			[[Category: Virus]]

OCA at 10:46, 30 March 2022

2022-03-30T10:46:20Z

← Older revision		Revision as of 10:46, 30 March 2022
Line 1:		Line 1:
	~~'''Unreleased structure'''~~

	~~The entry~~ 7rob is ~~ON HOLD until Paper Publication~~		==Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6==
			<StructureSection load='7rob' size='340' side='right'caption='[[7rob]]' scene=''>
	~~Authors~~: ~~Wang~~, F.~~, Cvirkaite~~-~~Krupovic~~, V., ~~Krupovic~~, M., ~~Egelman, E~~.H.		== Structural highlights ==
			<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ROB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ROB FirstGlance]. <br>
	~~Description: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6~~		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rob OCA], [https://pdbe.org/7rob PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rob RCSB], [https://www.ebi.ac.uk/pdbsum/7rob PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rob ProSAT]</span></td></tr>
	[[Category: ~~Unreleased~~ Structures]]		</table>
	[[Category: Krupovic~~, M~~]]		__TOC__
	[[Category: Egelman~~, E.H~~]]		</StructureSection>
	[[Category: ~~Wang, F~~]]		[[Category: Large Structures]]
	[[Category: ~~Cvirkaite-Krupovic, V~~]]		[[Category: Cvirkaite-Krupovic V]]
			[[Category: Egelman EH]]
			[[Category: Krupovic M]]
			[[Category: Wang F]]

OCA at 07:42, 8 September 2021

2021-09-08T07:42:47Z

← Older revision		Revision as of 07:42, 8 September 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 7rob is ON HOLD		The entry 7rob is ON HOLD until Paper Publication

	Authors: Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.		Authors: Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.
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	Description: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6		Description: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
			[[Category: Krupovic, M]]
	[[Category: Egelman, E.H]]		[[Category: Egelman, E.H]]
	[[Category: Wang, F]]		[[Category: Wang, F]]
	~~[[Category: Krupovic, M]]~~
	[[Category: Cvirkaite-Krupovic, V]]		[[Category: Cvirkaite-Krupovic, V]]

OCA: Protected "7rob" [edit=sysop:move=sysop]

2021-08-11T05:11:00Z

Protected "7rob" [edit=sysop:move=sysop]

← Older revision	Revision as of 05:11, 11 August 2021
(No difference)

OCA: New page: '''Unreleased structure''' The entry 7rob is ON HOLD Authors: Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H. Description: Cryo-EM reconstruction of Sulfolobus monocaudav...

2021-08-11T05:10:59Z

New page: '''Unreleased structure''' The entry 7rob is ON HOLD Authors: Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H. Description: Cryo-EM reconstruction of Sulfolobus monocaudav...

New page

'''Unreleased structure'''

The entry 7rob is ON HOLD

Authors: Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

Description: Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 6
[[Category: Unreleased Structures]]
[[Category: Egelman, E.H]]
[[Category: Wang, F]]
[[Category: Krupovic, M]]
[[Category: Cvirkaite-Krupovic, V]]