7vae - Revision history

OCA at 11:39, 23 October 2024

2024-10-23T11:39:25Z

← Older revision		Revision as of 11:39, 23 October 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7vae]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VAE FirstGlance]. <br>		<table><tr><td colspan='2'>[[7vae]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VAE FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vae OCA], [https://pdbe.org/7vae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vae RCSB], [https://www.ebi.ac.uk/pdbsum/7vae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vae ProSAT]</span></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.55Å</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vae OCA], [https://pdbe.org/7vae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vae RCSB], [https://www.ebi.ac.uk/pdbsum/7vae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vae ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/Q2KJ85_BOVIN Q2KJ85_BOVIN]]		[https://www.uniprot.org/uniprot/Q2KJ85_BOVIN Q2KJ85_BOVIN]
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			Chronic infection with hepatitis B virus (HBV) affects more than 290 million people worldwide, is a major cause of cirrhosis and hepatocellular carcinoma, and results in an estimated 820,000 deaths annually(1,2). For HBV infection to be established, a molecular interaction is required between the large glycoproteins of the virus envelope (known as LHBs) and the host entry receptor sodium taurocholate co-transporting polypeptide (NTCP), a sodium-dependent bile acid transporter from the blood to hepatocytes(3). However, the molecular basis for the virus-transporter interaction is poorly understood. Here we report the cryo-electron microscopy structures of human, bovine and rat NTCPs in the apo state, which reveal the presence of a tunnel across the membrane and a possible transport route for the substrate. Moreover, the cryo-electron microscopy structure of human NTCP in the presence of the myristoylated preS1 domain of LHBs, together with mutation and transport assays, suggest a binding mode in which preS1 and the substrate compete for the extracellular opening of the tunnel in NTCP. Our preS1 domain interaction analysis enables a mechanistic interpretation of naturally occurring HBV-insusceptible mutations in human NTCP. Together, our findings provide a structural framework for HBV recognition and a mechanistic understanding of sodium-dependent bile acid translocation by mammalian NTCPs.

			Structure of the bile acid transporter and HBV receptor NTCP.,Asami J, Kimura KT, Fujita-Fujiharu Y, Ishida H, Zhang Z, Nomura Y, Liu K, Uemura T, Sato Y, Ono M, Yamamoto M, Noda T, Shigematsu H, Drew D, Iwata S, Shimizu T, Nomura N, Ohto U Nature. 2022 Jun;606(7916):1021-1026. doi: 10.1038/s41586-022-04845-4. Epub 2022 , May 17. PMID:35580629<ref>PMID:35580629</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 7vae" style="background-color:#fffaf0;"></div>

			==See Also==
			*[[Antibody 3D structures\|Antibody 3D structures]]
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 06:27, 8 September 2022

2022-09-08T06:27:16Z

← Older revision		Revision as of 06:27, 8 September 2022
Line 1:		Line 1:

	====		==Cryo-EM structure of bovine NTCP complexed with YN69202Fab==
	<StructureSection load='7vae' size='340' side='right'caption='[[7vae]]' scene=''>		<StructureSection load='7vae' size='340' side='right'caption='[[7vae]], [[Resolution\|resolution]] 3.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>		<table><tr><td colspan='2'>[[7vae]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VAE FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vae OCA], [https://pdbe.org/7vae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vae RCSB], [https://www.ebi.ac.uk/pdbsum/7vae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vae ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vae OCA], [https://pdbe.org/7vae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vae RCSB], [https://www.ebi.ac.uk/pdbsum/7vae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vae ProSAT]</span></td></tr>
	</table>		</table>
			== Function ==
			[[https://www.uniprot.org/uniprot/Q2KJ85_BOVIN Q2KJ85_BOVIN]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
			[[Category: Bos taurus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: ~~Z-disk~~]]		[[Category: Mus musculus]]
			[[Category: Asami J]]
			[[Category: Ohto U]]
			[[Category: Shimizu T]]

OCA at 07:59, 25 May 2022

2022-05-25T07:59:53Z

← Older revision		Revision as of 07:59, 25 May 2022
Line 1:		Line 1:
	~~'''Unreleased structure'''~~

	~~The entry~~ 7vae is ~~ON HOLD until Paper Publication~~		====
			<StructureSection load='7vae' size='340' side='right'caption='[[7vae]]' scene=''>
	~~Authors:~~		== Structural highlights ==
			<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
	~~Description~~:		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vae OCA], [https://pdbe.org/7vae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vae RCSB], [https://www.ebi.ac.uk/pdbsum/7vae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vae ProSAT]</span></td></tr>
	[[Category: ~~Unreleased Structures~~]]		</table>
			__TOC__
			</StructureSection>
			[[Category: Large Structures]]
			[[Category: Z-disk]]

OCA at 12:17, 29 December 2021

2021-12-29T12:17:25Z

← Older revision		Revision as of 12:17, 29 December 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 7vae is ON HOLD		The entry 7vae is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7vae" [edit=sysop:move=sysop]

2021-09-08T08:01:21Z

Protected "7vae" [edit=sysop:move=sysop]

← Older revision	Revision as of 08:01, 8 September 2021
(No difference)

OCA: New page: '''Unreleased structure''' The entry 7vae is ON HOLD Authors: Description: Category: Unreleased Structures

2021-09-08T08:01:20Z

New page: '''Unreleased structure''' The entry 7vae is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7vae is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]