8a44 - Revision history

OCA at 09:25, 17 October 2024

2024-10-17T09:25:57Z

← Older revision		Revision as of 09:25, 17 October 2024
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8a44 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8a44 OCA], [https://pdbe.org/8a44 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8a44 RCSB], [https://www.ebi.ac.uk/pdbsum/8a44 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8a44 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8a44 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8a44 OCA], [https://pdbe.org/8a44 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8a44 RCSB], [https://www.ebi.ac.uk/pdbsum/8a44 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8a44 ProSAT]</span></td></tr>
	</table>		</table>
	== ~~Function~~ ==		<div style="background-color:#fffaf0;">
	~~[https~~://~~www~~.~~uniprot~~.~~org~~/~~uniprot~~/~~A0A7M1C9Q0_PLAVI A0A7M1C9Q0_PLAVI]~~		== Publication Abstract from PubMed ==
			The symptoms of malaria occur during the blood stage of infection, when the parasite replicates within human red blood cells. The human malaria parasite, Plasmodium vivax, selectively invades reticulocytes in a process which requires an interaction between the ectodomain of the human DARC receptor and the Plasmodium vivax Duffy-binding protein, PvDBP. Previous studies have revealed that a small helical peptide from DARC binds to region II of PvDBP (PvDBP-RII). However, it is also known that sulphation of tyrosine residues on DARC affects its binding to PvDBP and these residues were not observed in previous structures. We therefore present the structure of PvDBP-RII bound to sulphated DARC peptide, showing that a sulphate on tyrosine 41 binds to a charged pocket on PvDBP-RII. We use molecular dynamics simulations, affinity measurements and growth-inhibition experiments in parasites to confirm the importance of this interaction. We also reveal the epitope for vaccine-elicited growth-inhibitory antibody DB1. This provides a complete understanding of the binding of PvDBP-RII to DARC and will guide the design of vaccines and therapeutics to target this essential interaction.

			Structural basis for DARC binding in reticulocyte invasion by Plasmodium vivax.,Moskovitz R, Pholcharee T, DonVito SM, Guloglu B, Lowe E, Mohring F, Moon RW, Higgins MK Nat Commun. 2023 Jun 19;14(1):3637. doi: 10.1038/s41467-023-39357-w. PMID:37336887<ref>PMID:37336887</ref>

			From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
			</div>
			<div class="pdbe-citations 8a44" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Monoclonal Antibodies 3D structures\|Monoclonal Antibodies 3D structures]]		*[[Monoclonal Antibodies 3D structures\|Monoclonal Antibodies 3D structures]]
			== References ==
			<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 05:52, 5 July 2023

2023-07-05T05:52:26Z

← Older revision		Revision as of 05:52, 5 July 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[8a44]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8A44 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8A44 FirstGlance]. <br>		<table><tr><td colspan='2'>[[8a44]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8A44 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8A44 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TYS:O-SULFO-L-TYROSINE'>TYS</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.49Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TYS:O-SULFO-L-TYROSINE'>TYS</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8a44 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8a44 OCA], [https://pdbe.org/8a44 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8a44 RCSB], [https://www.ebi.ac.uk/pdbsum/8a44 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8a44 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8a44 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8a44 OCA], [https://pdbe.org/8a44 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8a44 RCSB], [https://www.ebi.ac.uk/pdbsum/8a44 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8a44 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/A0A7M1C9Q0_PLAVI A0A7M1C9Q0_PLAVI]		[https://www.uniprot.org/uniprot/A0A7M1C9Q0_PLAVI A0A7M1C9Q0_PLAVI]

			==See Also==
			*[[Monoclonal Antibodies 3D structures\|Monoclonal Antibodies 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 05:36, 7 June 2023

2023-06-07T05:36:27Z

← Older revision		Revision as of 05:36, 7 June 2023
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	~~'''Unreleased structure'''~~

	~~The entry~~ 8a44 is ~~ON HOLD until Paper Publication~~		==Plasmodium vivax Duffy binding protein region II bound the DARC ectodomain and monoclonal antibody DB1==
			<StructureSection load='8a44' size='340' side='right'caption='[[8a44]], [[Resolution\|resolution]] 2.49Å' scene=''>
	~~Authors~~:		== Structural highlights ==
			<table><tr><td colspan='2'>[[8a44]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Plasmodium_vivax Plasmodium vivax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8A44 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8A44 FirstGlance]. <br>
	~~Description~~:		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TYS:O-SULFO-L-TYROSINE'>TYS</scene></td></tr>
	[[Category: ~~Unreleased~~ Structures]]		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8a44 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8a44 OCA], [https://pdbe.org/8a44 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8a44 RCSB], [https://www.ebi.ac.uk/pdbsum/8a44 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8a44 ProSAT]</span></td></tr>
			</table>
			== Function ==
			[https://www.uniprot.org/uniprot/A0A7M1C9Q0_PLAVI A0A7M1C9Q0_PLAVI]
			__TOC__
			</StructureSection>
			[[Category: Homo sapiens]]
			[[Category: Large Structures]]
			[[Category: Plasmodium vivax]]
			[[Category: Higgins MK]]
			[[Category: Moskovitz R]]

OCA at 03:47, 31 May 2023

2023-05-31T03:47:02Z

← Older revision		Revision as of 03:47, 31 May 2023
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 8a44 is ON HOLD		The entry 8a44 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 05:23, 18 May 2023

2023-05-18T05:23:58Z

← Older revision		Revision as of 05:23, 18 May 2023
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 8a44 is ON HOLD ~~until Paper Publication~~		The entry 8a44 is ON HOLD

	Authors:		Authors:

OCA at 04:43, 7 April 2023

2023-04-07T04:43:11Z

← Older revision		Revision as of 04:43, 7 April 2023
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 8a44 is ON HOLD		The entry 8a44 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 04:14, 2 March 2023

2023-03-02T04:14:15Z

← Older revision		Revision as of 04:14, 2 March 2023
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 8a44 is ON HOLD ~~until Paper Publication~~		The entry 8a44 is ON HOLD

	Authors:		Authors:

OCA at 03:41, 25 August 2022

2022-08-25T03:41:34Z

← Older revision		Revision as of 03:41, 25 August 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 8a44 is ON HOLD		The entry 8a44 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "8a44" [edit=sysop:move=sysop]

2022-06-22T07:18:07Z

Protected "8a44" [edit=sysop:move=sysop]

← Older revision	Revision as of 07:18, 22 June 2022
(No difference)

OCA: New page: '''Unreleased structure''' The entry 8a44 is ON HOLD Authors: Description: Category: Unreleased Structures

2022-06-22T07:18:06Z

New page: '''Unreleased structure''' The entry 8a44 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8a44 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]