8fvb - Revision history

OCA at 10:33, 25 October 2023

2023-10-25T10:33:48Z

← Older revision		Revision as of 10:33, 25 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[8fvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8FVB FirstGlance]. <br>		<table><tr><td colspan='2'>[[8fvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8FVB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CTP:CYTIDINE-5-TRIPHOSPHATE'>CTP</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr>		</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.03Å</td></tr>
			<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CTP:CYTIDINE-5-TRIPHOSPHATE'>CTP</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8fvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8fvb OCA], [https://pdbe.org/8fvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8fvb RCSB], [https://www.ebi.ac.uk/pdbsum/8fvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8fvb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8fvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8fvb OCA], [https://pdbe.org/8fvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8fvb RCSB], [https://www.ebi.ac.uk/pdbsum/8fvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8fvb ProSAT]</span></td></tr>
	</table>		</table>

OCA at 04:06, 25 May 2023

2023-05-25T04:06:13Z

← Older revision		Revision as of 04:06, 25 May 2023
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	~~'''Unreleased structure'''~~

	~~The entry~~ 8fvb is ~~ON HOLD until Paper~~ Publication		==E coli. CTP synthase in complex with CTP==
			<StructureSection load='8fvb' size='340' side='right'caption='[[8fvb]], [[Resolution\|resolution]] 2.03Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[8fvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8FVB FirstGlance]. <br>
			</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CTP:CYTIDINE-5-TRIPHOSPHATE'>CTP</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8fvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8fvb OCA], [https://pdbe.org/8fvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8fvb RCSB], [https://www.ebi.ac.uk/pdbsum/8fvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8fvb ProSAT]</span></td></tr>
			</table>
			== Function ==
			[https://www.uniprot.org/uniprot/PYRG_ECO45 PYRG_ECO45] Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			CTP synthases (CTPS) catalyze the de novo production of CTP using UTP, ATP, and l-glutamine with the anticancer drug metabolite gemcitabine-5'-triphosphate (dF-dCTP) being one of its most potent nucleotide inhibitors. To delineate the structural origins of this inhibition, we solved the structures of Escherichia coli CTPS (ecCTPS) in complex with CTP (2.0 A), 2'-ribo-F-dCTP (2.0 A), 2'-arabino-F-CTP (2.4 A), dF-dCTP (2.3 A), dF-dCTP and ADP (2.1 A), and dF-dCTP and ATP (2.1 A). These structures revealed that the increased binding affinities observed for inhibitors bearing the 2'-F-arabino group (dF-dCTP and F-araCTP), relative to CTP and F-dCTP, arise from interactions between the inhibitor's fluorine atom exploiting a conserved hydrophobic pocket formed by F227 and an interdigitating loop from an adjacent subunit (Q114-V115-I116). Intriguingly, crystal structures of ecCTPSdF-dCTP complexes in the presence of select monovalent and divalent cations demonstrated that the in crystallo tetrameric assembly of wild-type ecCTPS was induced into a conformation similar to inhibitory ecCTPS filaments solely through the binding of Na(+) -, Mg(2+) -, or Mn(2+) dF-dCTP. However, in the presence of potassium, the dF-dCTP-bound structure is demetalated and in the low-affinity, non-filamentous conformation, like the conformation seen when bound to CTP and the other nucleotide analogues. Additionally, CTP can also induce the filament-competent conformation linked to high-affinity dF-dCTP binding in the presence of high concentrations of Mg(2+) . This metal-dependent, compacted CTP pocket conformation therefore furnishes the binding environment responsible for the tight binding of dF-dCTP and provides insights for further inhibitor design. This article is protected by copyright. All rights reserved.

	~~Authors: Holyoak, T~~., McLeod, M.J.~~, Tran, N~~.		A metal dependent conformational change provides a structural basis for the inhibition of CTP synthase by gemcitabine-5'-triphosphate.,McLeod MJ, Tran N, McCluskey GD, Gillis TD, Bearne SL, Holyoak T Protein Sci. 2023 Apr 27:e4648. doi: 10.1002/pro.4648. PMID:37106216<ref>PMID:37106216</ref>

	~~Description~~: E coli~~. CTP synthase in complex with CTP~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	[[Category: ~~Unreleased~~ Structures]]		</div>
	[[Category: Holyoak, T]]		<div class="pdbe-citations 8fvb" style="background-color:#fffaf0;"></div>
	[[Category: ~~Mcleod, M.J~~]]		== References ==
	[[Category: Tran, N]]		<references/>
			__TOC__
			</StructureSection>
			[[Category: Escherichia coli]]
			[[Category: Large Structures]]
			[[Category: Holyoak T]]
			[[Category: McLeod MJ]]
			[[Category: Tran N]]

OCA at 04:25, 2 March 2023

2023-03-02T04:25:07Z

← Older revision		Revision as of 04:25, 2 March 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 8fvb is ON HOLD		The entry 8fvb is ON HOLD until Paper Publication

	Authors: Holyoak, T., McLeod, M.J., Tran, N.		Authors: Holyoak, T., McLeod, M.J., Tran, N.

OCA: Protected "8fvb" [edit=sysop:move=sysop]

2023-01-25T05:01:49Z

Protected "8fvb" [edit=sysop:move=sysop]

← Older revision	Revision as of 05:01, 25 January 2023
(No difference)

OCA: New page: '''Unreleased structure''' The entry 8fvb is ON HOLD Authors: Holyoak, T., McLeod, M.J., Tran, N. Description: E coli. CTP synthase in complex with CTP [[Category: Unreleased Structure...

2023-01-25T05:01:48Z

New page: '''Unreleased structure''' The entry 8fvb is ON HOLD Authors: Holyoak, T., McLeod, M.J., Tran, N. Description: E coli. CTP synthase in complex with CTP [[Category: Unreleased Structure...

New page

'''Unreleased structure'''

The entry 8fvb is ON HOLD

Authors: Holyoak, T., McLeod, M.J., Tran, N.

Description: E coli. CTP synthase in complex with CTP
[[Category: Unreleased Structures]]
[[Category: Holyoak, T]]
[[Category: Mcleod, M.J]]
[[Category: Tran, N]]