8hex - Revision history

OCA at 07:20, 21 November 2024

2024-11-21T07:20:37Z

← Older revision		Revision as of 07:20, 21 November 2024
Line 8:		Line 8:
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/Q6RXF2_HCMV Q6RXF2_HCMV] Structural component of the T=16 icosahedral capsid. The capsid is composed of pentamers and hexamers of major capsid protein/MCP, which are linked together by heterotrimers called triplexes. These triplexes are formed by a single molecule of triplex protein 1/TRX1 and two copies of triplex protein 2/TRX2. Additionally, TRX1 is required for efficient transport of TRX2 to the nucleus, which is the site of capsid assembly.[HAMAP-Rule:MF_04019]		[https://www.uniprot.org/uniprot/Q6RXF2_HCMV Q6RXF2_HCMV]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 13:08, 1 November 2023

2023-11-01T13:08:43Z

← Older revision		Revision as of 13:08, 1 November 2023
Line 1:		Line 1:
	~~'''Unreleased structure'''~~

	The ~~entry 8hex~~ is ~~ON HOLD until Paper~~ Publication		==C5 portal vertex in HCMV B-capsid==
			<StructureSection load='8hex' size='340' side='right'caption='[[8hex]], [[Resolution\|resolution]] 4.00Å' scene=''>
			== Structural highlights ==
			<table><tr><td colspan='2'>[[8hex]] is a 23 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_betaherpesvirus_5 Human betaherpesvirus 5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8HEX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8HEX FirstGlance]. <br>
			</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 4Å</td></tr>
			<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8hex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8hex OCA], [https://pdbe.org/8hex PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8hex RCSB], [https://www.ebi.ac.uk/pdbsum/8hex PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8hex ProSAT]</span></td></tr>
			</table>
			== Function ==
			[https://www.uniprot.org/uniprot/Q6RXF2_HCMV Q6RXF2_HCMV] Structural component of the T=16 icosahedral capsid. The capsid is composed of pentamers and hexamers of major capsid protein/MCP, which are linked together by heterotrimers called triplexes. These triplexes are formed by a single molecule of triplex protein 1/TRX1 and two copies of triplex protein 2/TRX2. Additionally, TRX1 is required for efficient transport of TRX2 to the nucleus, which is the site of capsid assembly.[HAMAP-Rule:MF_04019]
			<div style="background-color:#fffaf0;">
			== Publication Abstract from PubMed ==
			The portal-scaffold complex is believed to nucleate the assembly of herpesvirus procapsids. During capsid maturation, two events occur: scaffold expulsion and DNA incorporation. The portal-scaffold interaction and the conformational changes that occur to the portal during the different stages of capsid formation have yet to be elucidated structurally. Here we present high-resolution structures of the A- and B-capsids and in-situ portals of human cytomegalovirus. We show that scaffolds bind to the hydrophobic cavities formed by the dimerization and Johnson-fold domains of the major capsid proteins. We further show that 12 loop-helix-loop fragments-presumably from the scaffold domain-insert into the hydrophobic pocket of the portal crown domain. The portal also undergoes significant changes both positionally and conformationally as it accompanies DNA packaging. These findings unravel the mechanism by which the portal interacts with the scaffold to nucleate capsid assembly and further our understanding of scaffold expulsion and DNA incorporation.

	~~Authors:~~ Li, Z., Yu, X.		Cryo-electron microscopy structures of capsids and in situ portals of DNA-devoid capsids of human cytomegalovirus.,Li Z, Pang J, Gao R, Wang Q, Zhang M, Yu X Nat Commun. 2023 Apr 11;14(1):2025. doi: 10.1038/s41467-023-37779-0. PMID:37041152<ref>PMID:37041152</ref>

	~~Description~~: ~~C5 portal vertex in HCMV B-capsid~~		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	[[Category: ~~Unreleased Structures~~]]		</div>
	[[Category: ~~Yu, X~~]]		<div class="pdbe-citations 8hex" style="background-color:#fffaf0;"></div>
	[[Category: Li, Z]]		== References ==
			<references/>
			__TOC__
			</StructureSection>
			[[Category: Human betaherpesvirus 5]]
			[[Category: Large Structures]]
			[[Category: Li Z]]
			[[Category: Yu X]]

OCA at 06:57, 21 December 2022

2022-12-21T06:57:22Z

← Older revision		Revision as of 06:57, 21 December 2022
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

	The entry 8hex is ON HOLD		The entry 8hex is ON HOLD until Paper Publication

	Authors: Li, Z., Yu, X.		Authors: Li, Z., Yu, X.

OCA: Protected "8hex" [edit=sysop:move=sysop]

2022-11-16T18:28:44Z

Protected "8hex" [edit=sysop:move=sysop]

← Older revision	Revision as of 18:28, 16 November 2022
(No difference)

OCA: New page: '''Unreleased structure''' The entry 8hex is ON HOLD Authors: Li, Z., Yu, X. Description: C5 portal vertex in HCMV B-capsid Category: Unreleased Structures Category: Yu, X [[Ca...

2022-11-16T18:28:43Z

New page: '''Unreleased structure''' The entry 8hex is ON HOLD Authors: Li, Z., Yu, X. Description: C5 portal vertex in HCMV B-capsid Category: Unreleased Structures Category: Yu, X [[Ca...

New page

'''Unreleased structure'''

The entry 8hex is ON HOLD

Authors: Li, Z., Yu, X.

Description: C5 portal vertex in HCMV B-capsid
[[Category: Unreleased Structures]]
[[Category: Yu, X]]
[[Category: Li, Z]]